Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3564

Experiment: Rifampicin 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rifampicin 0.003 mg/ml
4,154,273	+				+1.1
4,154,273	+				-0.0
4,154,273	+				-1.1
4,154,273	+				-0.9
4,154,273	+				+2.5
4,154,274	-				-1.1
4,154,274	-				+0.7
4,154,274	-				-0.3
4,154,274	-				+1.7
4,154,274	-				+1.2
4,154,274	-				-0.9
4,154,274	-				-1.2
4,154,274	-				+0.4
4,154,274	-				-1.0
4,154,288	-				+0.7
4,154,314	+				+0.1
4,154,315	-				-0.3
4,154,404	+				-1.9
4,154,404	+				-2.5
4,154,404	+				+0.5
4,154,404	+				+3.1
4,154,405	-				-0.4
4,154,448	-				-1.6
4,154,715	+		Pf6N2E2_3563	0.39	-0.2
4,154,925	+		Pf6N2E2_3563	0.72	+0.1
4,154,925	+		Pf6N2E2_3563	0.72	-0.0
4,154,967	-		Pf6N2E2_3563	0.78	-0.5
4,154,967	-		Pf6N2E2_3563	0.78	+1.1
4,155,100	+				-0.4
4,155,100	+				-1.7
4,155,101	-				-1.8
4,155,128	+				-0.7
4,155,144	+				+0.8
4,155,144	+				+0.2
4,155,144	+				-1.0
4,155,145	-				+1.3
4,155,193	-				+0.5
4,155,211	-				+0.9
4,155,418	+		Pf6N2E2_3564	0.19	-1.4
4,155,419	-		Pf6N2E2_3564	0.19	-0.2
4,155,589	-		Pf6N2E2_3564	0.37	+0.5
4,155,589	-		Pf6N2E2_3564	0.37	-0.3
4,155,708	+		Pf6N2E2_3564	0.49	-0.4
4,155,744	+		Pf6N2E2_3564	0.53	-1.6
4,155,744	+		Pf6N2E2_3564	0.53	-0.5
4,155,744	+		Pf6N2E2_3564	0.53	-1.2
4,155,745	-		Pf6N2E2_3564	0.53	+0.2
4,155,825	+		Pf6N2E2_3564	0.62	-2.5
4,155,825	+		Pf6N2E2_3564	0.62	+0.4
4,155,825	+		Pf6N2E2_3564	0.62	+0.3
4,155,826	-		Pf6N2E2_3564	0.62	+0.6
4,155,826	-		Pf6N2E2_3564	0.62	+0.2
4,155,901	-		Pf6N2E2_3564	0.70	-1.6
4,155,916	-		Pf6N2E2_3564	0.71	+0.3
4,155,916	-		Pf6N2E2_3564	0.71	-0.3
4,155,965	+		Pf6N2E2_3564	0.77	-0.3
4,155,965	+		Pf6N2E2_3564	0.77	-0.3
4,156,042	-		Pf6N2E2_3564	0.85	+0.7
4,156,182	+				+0.3
4,156,183	-				+1.1
4,156,183	-				+0.6
4,156,258	+				+0.4
4,156,258	+				+0.4
4,156,267	+				+0.9
4,156,268	-				+0.6
4,156,268	-				+0.8
4,156,268	-				-1.3
4,156,268	-				+0.6
4,156,268	-				+1.2
4,156,327	-		Pf6N2E2_3565	0.16	+0.6
4,156,402	-		Pf6N2E2_3565	0.30	+0.7
4,156,413	+		Pf6N2E2_3565	0.32	-0.1
4,156,413	+		Pf6N2E2_3565	0.32	-0.0
4,156,414	-		Pf6N2E2_3565	0.32	-1.5
4,156,414	-		Pf6N2E2_3565	0.32	-0.2
4,156,414	-		Pf6N2E2_3565	0.32	+0.8
4,156,578	+		Pf6N2E2_3565	0.63	+0.2
4,156,578	+		Pf6N2E2_3565	0.63	+0.2
4,156,578	+		Pf6N2E2_3565	0.63	-2.6
4,156,578	+		Pf6N2E2_3565	0.63	+0.2
4,156,578	+		Pf6N2E2_3565	0.63	+1.6
4,156,578	+		Pf6N2E2_3565	0.63	+0.6
4,156,579	-		Pf6N2E2_3565	0.63	+1.5
4,156,611	+		Pf6N2E2_3565	0.69	-0.9
4,156,611	+		Pf6N2E2_3565	0.69	+0.1
4,156,611	+		Pf6N2E2_3565	0.69	-0.6
4,156,612	-		Pf6N2E2_3565	0.70	+0.1
4,156,612	-		Pf6N2E2_3565	0.70	+0.5
4,156,612	-		Pf6N2E2_3565	0.70	-0.8
4,156,668	+		Pf6N2E2_3565	0.80	-0.7
4,156,668	+		Pf6N2E2_3565	0.80	-0.4
4,156,668	+		Pf6N2E2_3565	0.80	+0.7
4,156,668	+		Pf6N2E2_3565	0.80	-1.8
4,156,668	+		Pf6N2E2_3565	0.80	+0.9
4,156,668	+		Pf6N2E2_3565	0.80	+0.5
4,156,669	-		Pf6N2E2_3565	0.80	-0.8
4,156,773	+				+0.5
4,156,774	-				-1.4
4,156,779	+				+0.5
4,156,779	+				+1.4
4,156,779	+				-0.5
4,156,780	-				+0.2
4,156,785	+				-0.1
4,157,102	+		Pf6N2E2_3566	0.10	+0.4
4,157,103	-		Pf6N2E2_3566	0.11	+0.3
4,157,103	-		Pf6N2E2_3566	0.11	+0.7
4,157,103	-		Pf6N2E2_3566	0.11	-0.1
4,157,103	-		Pf6N2E2_3566	0.11	-0.3
4,157,103	-		Pf6N2E2_3566	0.11	-0.1
4,157,103	-		Pf6N2E2_3566	0.11	-0.1
4,157,103	-		Pf6N2E2_3566	0.11	-0.3
4,157,103	-		Pf6N2E2_3566	0.11	-0.8
4,157,103	-		Pf6N2E2_3566	0.11	-1.6