Experiment: Rifampicin 0.003 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_144 and Pf6N2E2_145 are separated by 17 nucleotides Pf6N2E2_145 and Pf6N2E2_146 are separated by 235 nucleotides Pf6N2E2_146 and Pf6N2E2_147 are separated by 4 nucleotides
Pf6N2E2_144 - Uncharacterized protein YtfM precursor, at 195,456 to 197,165
_144
Pf6N2E2_145 - putative exported protein, at 197,183 to 200,836
_145
Pf6N2E2_146 - Transcriptional regulator, MarR family, at 201,072 to 201,554
_146
Pf6N2E2_147 - Outer membrane component of tripartite multidrug resistance system, at 201,559 to 203,013
_147
Position (kb) 197
198
199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 196.326 kb on + strand, within Pf6N2E2_144 at 196.326 kb on + strand, within Pf6N2E2_144 at 196.326 kb on + strand at 196.327 kb on - strand, within Pf6N2E2_144 at 196.327 kb on - strand, within Pf6N2E2_144 at 196.377 kb on + strand, within Pf6N2E2_144 at 196.378 kb on - strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.414 kb on + strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.415 kb on - strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.437 kb on + strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.438 kb on - strand, within Pf6N2E2_144 at 196.557 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.611 kb on + strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.612 kb on - strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.617 kb on + strand, within Pf6N2E2_144 at 196.618 kb on - strand, within Pf6N2E2_144 at 196.618 kb on - strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.717 kb on + strand, within Pf6N2E2_144 at 196.718 kb on - strand, within Pf6N2E2_144 at 196.719 kb on + strand, within Pf6N2E2_144 at 196.719 kb on + strand, within Pf6N2E2_144 at 196.720 kb on - strand, within Pf6N2E2_144 at 196.720 kb on - strand, within Pf6N2E2_144 at 196.865 kb on - strand, within Pf6N2E2_144 at 196.865 kb on - strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.929 kb on + strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.930 kb on - strand, within Pf6N2E2_144 at 196.954 kb on - strand, within Pf6N2E2_144 at 196.959 kb on + strand, within Pf6N2E2_144 at 196.959 kb on + strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 196.960 kb on - strand, within Pf6N2E2_144 at 197.015 kb on + strand at 197.015 kb on + strand at 197.016 kb on - strand at 197.016 kb on - strand at 197.181 kb on + strand at 197.182 kb on - strand at 197.182 kb on - strand at 197.376 kb on + strand at 197.822 kb on + strand, within Pf6N2E2_145 at 197.823 kb on - strand, within Pf6N2E2_145 at 197.823 kb on - strand, within Pf6N2E2_145 at 198.235 kb on + strand, within Pf6N2E2_145 at 198.257 kb on + strand, within Pf6N2E2_145 at 198.272 kb on + strand, within Pf6N2E2_145 at 198.272 kb on + strand, within Pf6N2E2_145 at 198.479 kb on + strand, within Pf6N2E2_145 at 199.415 kb on - strand, within Pf6N2E2_145 at 199.419 kb on + strand, within Pf6N2E2_145 at 199.420 kb on - strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.961 kb on + strand, within Pf6N2E2_145 at 199.962 kb on - strand, within Pf6N2E2_145 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.363 kb on + strand, within Pf6N2E2_145 at 200.492 kb on + strand at 200.493 kb on - strand at 200.608 kb on + strand at 200.754 kb on - strand at 200.774 kb on + strand at 200.774 kb on + strand at 200.775 kb on - strand at 200.775 kb on - strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.819 kb on + strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.820 kb on - strand at 200.834 kb on + strand at 200.835 kb on - strand at 200.835 kb on - strand at 200.881 kb on - strand at 200.959 kb on + strand at 200.959 kb on + strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.960 kb on - strand at 200.977 kb on + strand at 200.993 kb on - strand at 200.996 kb on + strand at 200.997 kb on - strand at 200.997 kb on - strand at 201.018 kb on + strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.039 kb on - strand at 201.052 kb on - strand at 201.167 kb on + strand, within Pf6N2E2_146 at 201.167 kb on + strand, within Pf6N2E2_146 at 201.552 kb on + strand at 201.552 kb on + strand at 201.553 kb on - strand at 201.553 kb on - strand at 201.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rifampicin 0.003 mg/ml remove 196,326 + Pf6N2E2_144 0.51 -3.1 196,326 + Pf6N2E2_144 0.51 -0.6 196,326 + +0.9 196,327 - Pf6N2E2_144 0.51 -3.3 196,327 - Pf6N2E2_144 0.51 -1.0 196,377 + Pf6N2E2_144 0.54 +0.0 196,378 - Pf6N2E2_144 0.54 -1.5 196,414 + Pf6N2E2_144 0.56 -3.7 196,414 + Pf6N2E2_144 0.56 -0.8 196,414 + Pf6N2E2_144 0.56 -1.2 196,414 + Pf6N2E2_144 0.56 -0.7 196,414 + Pf6N2E2_144 0.56 -1.2 196,414 + Pf6N2E2_144 0.56 -0.7 196,414 + Pf6N2E2_144 0.56 -2.4 196,414 + Pf6N2E2_144 0.56 -0.7 196,414 + Pf6N2E2_144 0.56 -1.5 196,414 + Pf6N2E2_144 0.56 -2.9 196,414 + Pf6N2E2_144 0.56 -2.4 196,414 + Pf6N2E2_144 0.56 -1.2 196,415 - Pf6N2E2_144 0.56 -1.2 196,415 - Pf6N2E2_144 0.56 -0.9 196,415 - Pf6N2E2_144 0.56 -0.3 196,415 - Pf6N2E2_144 0.56 -0.7 196,415 - Pf6N2E2_144 0.56 -2.8 196,415 - Pf6N2E2_144 0.56 -3.0 196,415 - Pf6N2E2_144 0.56 -1.9 196,415 - Pf6N2E2_144 0.56 +0.2 196,415 - Pf6N2E2_144 0.56 -0.5 196,415 - Pf6N2E2_144 0.56 -2.6 196,437 + Pf6N2E2_144 0.57 +1.0 196,437 + Pf6N2E2_144 0.57 -1.8 196,437 + Pf6N2E2_144 0.57 -0.8 196,437 + Pf6N2E2_144 0.57 -0.0 196,437 + Pf6N2E2_144 0.57 +1.1 196,438 - Pf6N2E2_144 0.57 -2.1 196,438 - Pf6N2E2_144 0.57 -3.3 196,438 - Pf6N2E2_144 0.57 -1.3 196,438 - Pf6N2E2_144 0.57 -0.7 196,438 - Pf6N2E2_144 0.57 -0.9 196,557 + Pf6N2E2_144 0.64 -0.9 196,611 + Pf6N2E2_144 0.68 -1.3 196,611 + Pf6N2E2_144 0.68 -1.3 196,611 + Pf6N2E2_144 0.68 -1.5 196,612 - Pf6N2E2_144 0.68 -3.0 196,612 - Pf6N2E2_144 0.68 -1.2 196,612 - Pf6N2E2_144 0.68 -1.7 196,617 + Pf6N2E2_144 0.68 -1.1 196,617 + Pf6N2E2_144 0.68 -0.4 196,617 + Pf6N2E2_144 0.68 -1.8 196,617 + Pf6N2E2_144 0.68 +1.0 196,617 + Pf6N2E2_144 0.68 -2.4 196,618 - Pf6N2E2_144 0.68 -1.8 196,618 - Pf6N2E2_144 0.68 -3.6 196,717 + Pf6N2E2_144 0.74 +0.0 196,717 + Pf6N2E2_144 0.74 -0.4 196,717 + Pf6N2E2_144 0.74 -2.4 196,718 - Pf6N2E2_144 0.74 -3.2 196,719 + Pf6N2E2_144 0.74 -0.4 196,719 + Pf6N2E2_144 0.74 -0.5 196,720 - Pf6N2E2_144 0.74 -1.1 196,720 - Pf6N2E2_144 0.74 -2.3 196,865 - Pf6N2E2_144 0.82 -1.5 196,865 - Pf6N2E2_144 0.82 -1.9 196,929 + Pf6N2E2_144 0.86 -1.9 196,929 + Pf6N2E2_144 0.86 -0.4 196,929 + Pf6N2E2_144 0.86 -1.5 196,929 + Pf6N2E2_144 0.86 -0.7 196,929 + Pf6N2E2_144 0.86 -2.3 196,929 + Pf6N2E2_144 0.86 -1.0 196,929 + Pf6N2E2_144 0.86 -2.0 196,930 - Pf6N2E2_144 0.86 -0.5 196,930 - Pf6N2E2_144 0.86 -1.9 196,930 - Pf6N2E2_144 0.86 +0.1 196,930 - Pf6N2E2_144 0.86 -1.2 196,930 - Pf6N2E2_144 0.86 -0.7 196,930 - Pf6N2E2_144 0.86 -2.0 196,930 - Pf6N2E2_144 0.86 -0.9 196,930 - Pf6N2E2_144 0.86 -0.6 196,954 - Pf6N2E2_144 0.88 -1.5 196,959 + Pf6N2E2_144 0.88 -3.1 196,959 + Pf6N2E2_144 0.88 -2.0 196,960 - Pf6N2E2_144 0.88 -1.1 196,960 - Pf6N2E2_144 0.88 -0.0 196,960 - Pf6N2E2_144 0.88 -2.7 197,015 + -1.7 197,015 + -0.8 197,016 - -0.8 197,016 - -1.1 197,181 + -0.1 197,182 - +0.9 197,182 - -1.5 197,376 + -3.0 197,822 + Pf6N2E2_145 0.17 -2.1 197,823 - Pf6N2E2_145 0.18 -1.8 197,823 - Pf6N2E2_145 0.18 -0.9 198,235 + Pf6N2E2_145 0.29 -1.0 198,257 + Pf6N2E2_145 0.29 -2.3 198,272 + Pf6N2E2_145 0.30 -0.8 198,272 + Pf6N2E2_145 0.30 -1.9 198,479 + Pf6N2E2_145 0.35 -1.1 199,415 - Pf6N2E2_145 0.61 -0.6 199,419 + Pf6N2E2_145 0.61 -0.7 199,420 - Pf6N2E2_145 0.61 -1.7 199,961 + Pf6N2E2_145 0.76 -1.3 199,961 + Pf6N2E2_145 0.76 +0.5 199,961 + Pf6N2E2_145 0.76 -2.1 199,962 - Pf6N2E2_145 0.76 -0.8 200,363 + Pf6N2E2_145 0.87 -2.0 200,363 + Pf6N2E2_145 0.87 -0.5 200,492 + -3.2 200,493 - -2.0 200,608 + -2.0 200,754 - -2.8 200,774 + -1.6 200,774 + -1.2 200,775 - -3.4 200,775 - -2.2 200,819 + -3.2 200,819 + -0.5 200,819 + -2.2 200,820 - -1.9 200,820 - -2.1 200,820 - -1.0 200,820 - -2.9 200,820 - -0.9 200,820 - -1.2 200,834 + +0.7 200,835 - -2.3 200,835 - -1.5 200,881 - -0.5 200,959 + +0.6 200,959 + +0.4 200,960 - +0.2 200,960 - +1.0 200,960 - -0.7 200,977 + +0.1 200,993 - +0.8 200,996 + -0.9 200,997 - -0.2 200,997 - +0.3 201,018 + -0.3 201,039 - -0.3 201,039 - -1.0 201,039 - -2.2 201,039 - +0.6 201,052 - -0.2 201,167 + Pf6N2E2_146 0.20 -0.2 201,167 + Pf6N2E2_146 0.20 +0.2 201,552 + +0.6 201,552 + +0.6 201,553 - +1.3 201,553 - -2.2 201,616 + +0.8
Or see this region's nucleotide sequence