Experiment: formate McAA lipolic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00590 and MMJJ_RS00595 are separated by 13 nucleotides MMJJ_RS00595 and MMJJ_RS00600 are separated by 89 nucleotides
MMJJ_RS00590: MMJJ_RS00590 - class I SAM-dependent methyltransferase, at 111,367 to 112,227
_RS00590
MMJJ_RS00595: MMJJ_RS00595 - tetratricopeptide repeat protein, at 112,241 to 113,956
_RS00595
MMJJ_RS00600: MMJJ_RS00600 - hydroxymethylbilane synthase, at 114,046 to 114,960
_RS00600
Position (kb) 112
113
114 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 111.268 kb on + strand at 111.325 kb on + strand at 111.339 kb on + strand at 111.482 kb on - strand, within MMJJ_RS00590 at 111.486 kb on + strand, within MMJJ_RS00590 at 111.513 kb on - strand, within MMJJ_RS00590 at 111.517 kb on + strand, within MMJJ_RS00590 at 111.524 kb on + strand, within MMJJ_RS00590 at 111.564 kb on + strand, within MMJJ_RS00590 at 111.592 kb on - strand, within MMJJ_RS00590 at 111.593 kb on + strand, within MMJJ_RS00590 at 111.627 kb on - strand, within MMJJ_RS00590 at 111.628 kb on + strand, within MMJJ_RS00590 at 111.635 kb on - strand, within MMJJ_RS00590 at 111.636 kb on + strand, within MMJJ_RS00590 at 111.636 kb on + strand, within MMJJ_RS00590 at 111.661 kb on + strand, within MMJJ_RS00590 at 111.665 kb on - strand, within MMJJ_RS00590 at 111.701 kb on - strand, within MMJJ_RS00590 at 111.701 kb on - strand, within MMJJ_RS00590 at 111.702 kb on + strand, within MMJJ_RS00590 at 111.702 kb on + strand, within MMJJ_RS00590 at 111.702 kb on + strand, within MMJJ_RS00590 at 111.702 kb on + strand, within MMJJ_RS00590 at 111.705 kb on - strand, within MMJJ_RS00590 at 111.705 kb on - strand, within MMJJ_RS00590 at 111.705 kb on - strand, within MMJJ_RS00590 at 111.705 kb on - strand, within MMJJ_RS00590 at 111.705 kb on - strand, within MMJJ_RS00590 at 111.706 kb on + strand, within MMJJ_RS00590 at 111.706 kb on + strand, within MMJJ_RS00590 at 111.706 kb on + strand, within MMJJ_RS00590 at 111.706 kb on + strand, within MMJJ_RS00590 at 111.707 kb on - strand, within MMJJ_RS00590 at 111.707 kb on - strand, within MMJJ_RS00590 at 111.708 kb on + strand, within MMJJ_RS00590 at 111.738 kb on + strand, within MMJJ_RS00590 at 111.747 kb on - strand, within MMJJ_RS00590 at 111.748 kb on + strand, within MMJJ_RS00590 at 111.751 kb on + strand, within MMJJ_RS00590 at 111.751 kb on + strand, within MMJJ_RS00590 at 111.764 kb on - strand at 111.788 kb on - strand, within MMJJ_RS00590 at 111.789 kb on + strand, within MMJJ_RS00590 at 111.789 kb on + strand, within MMJJ_RS00590 at 111.789 kb on + strand, within MMJJ_RS00590 at 111.823 kb on + strand, within MMJJ_RS00590 at 111.826 kb on - strand, within MMJJ_RS00590 at 111.846 kb on - strand, within MMJJ_RS00590 at 111.847 kb on + strand, within MMJJ_RS00590 at 111.847 kb on + strand, within MMJJ_RS00590 at 111.884 kb on - strand, within MMJJ_RS00590 at 111.884 kb on - strand, within MMJJ_RS00590 at 111.884 kb on - strand, within MMJJ_RS00590 at 111.884 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.886 kb on - strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.887 kb on + strand, within MMJJ_RS00590 at 111.888 kb on - strand, within MMJJ_RS00590 at 111.888 kb on - strand, within MMJJ_RS00590 at 111.888 kb on - strand, within MMJJ_RS00590 at 111.889 kb on + strand, within MMJJ_RS00590 at 111.912 kb on + strand, within MMJJ_RS00590 at 111.937 kb on - strand, within MMJJ_RS00590 at 111.938 kb on + strand, within MMJJ_RS00590 at 111.949 kb on - strand, within MMJJ_RS00590 at 111.950 kb on + strand, within MMJJ_RS00590 at 111.950 kb on + strand, within MMJJ_RS00590 at 111.961 kb on - strand, within MMJJ_RS00590 at 111.963 kb on - strand, within MMJJ_RS00590 at 111.964 kb on + strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.968 kb on - strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.969 kb on + strand, within MMJJ_RS00590 at 111.971 kb on - strand, within MMJJ_RS00590 at 111.971 kb on - strand, within MMJJ_RS00590 at 111.971 kb on - strand, within MMJJ_RS00590 at 111.972 kb on + strand, within MMJJ_RS00590 at 111.974 kb on + strand, within MMJJ_RS00590 at 111.986 kb on - strand, within MMJJ_RS00590 at 111.986 kb on - strand, within MMJJ_RS00590 at 111.987 kb on + strand, within MMJJ_RS00590 at 111.987 kb on + strand, within MMJJ_RS00590 at 111.987 kb on + strand, within MMJJ_RS00590 at 111.988 kb on - strand, within MMJJ_RS00590 at 111.988 kb on - strand, within MMJJ_RS00590 at 111.988 kb on - strand, within MMJJ_RS00590 at 111.988 kb on - strand, within MMJJ_RS00590 at 111.988 kb on - strand, within MMJJ_RS00590 at 111.989 kb on + strand, within MMJJ_RS00590 at 111.989 kb on + strand, within MMJJ_RS00590 at 111.989 kb on + strand, within MMJJ_RS00590 at 112.023 kb on + strand, within MMJJ_RS00590 at 112.069 kb on + strand, within MMJJ_RS00590 at 112.092 kb on + strand, within MMJJ_RS00590 at 112.101 kb on - strand, within MMJJ_RS00590 at 112.131 kb on + strand, within MMJJ_RS00590 at 112.222 kb on + strand at 112.230 kb on - strand at 112.239 kb on + strand at 112.278 kb on + strand at 112.279 kb on - strand at 112.280 kb on + strand at 112.290 kb on + strand at 112.325 kb on + strand at 112.328 kb on - strand at 112.334 kb on + strand at 112.387 kb on + strand at 112.387 kb on + strand at 112.402 kb on - strand at 112.403 kb on + strand at 112.403 kb on + strand at 112.405 kb on + strand at 112.406 kb on - strand at 112.406 kb on - strand at 112.407 kb on + strand at 112.407 kb on + strand at 112.407 kb on + strand at 112.407 kb on + strand at 112.450 kb on + strand, within MMJJ_RS00595 at 112.450 kb on + strand, within MMJJ_RS00595 at 112.471 kb on + strand, within MMJJ_RS00595 at 112.507 kb on - strand, within MMJJ_RS00595 at 112.532 kb on - strand, within MMJJ_RS00595 at 112.532 kb on - strand, within MMJJ_RS00595 at 112.532 kb on - strand, within MMJJ_RS00595 at 112.585 kb on + strand, within MMJJ_RS00595 at 112.689 kb on - strand, within MMJJ_RS00595 at 112.696 kb on - strand, within MMJJ_RS00595 at 112.712 kb on - strand, within MMJJ_RS00595 at 112.749 kb on - strand, within MMJJ_RS00595 at 112.867 kb on - strand, within MMJJ_RS00595 at 112.868 kb on + strand, within MMJJ_RS00595 at 112.896 kb on + strand, within MMJJ_RS00595 at 112.896 kb on + strand, within MMJJ_RS00595 at 112.896 kb on + strand, within MMJJ_RS00595 at 112.908 kb on + strand, within MMJJ_RS00595 at 113.006 kb on + strand, within MMJJ_RS00595 at 113.029 kb on - strand, within MMJJ_RS00595 at 113.030 kb on + strand, within MMJJ_RS00595 at 113.092 kb on - strand, within MMJJ_RS00595 at 113.173 kb on - strand, within MMJJ_RS00595 at 113.174 kb on + strand, within MMJJ_RS00595 at 113.355 kb on + strand, within MMJJ_RS00595 at 113.355 kb on + strand, within MMJJ_RS00595 at 113.364 kb on - strand, within MMJJ_RS00595 at 113.425 kb on - strand, within MMJJ_RS00595 at 113.431 kb on - strand, within MMJJ_RS00595 at 113.517 kb on - strand, within MMJJ_RS00595 at 113.517 kb on - strand, within MMJJ_RS00595 at 113.518 kb on + strand, within MMJJ_RS00595 at 113.519 kb on - strand, within MMJJ_RS00595 at 113.520 kb on + strand, within MMJJ_RS00595 at 113.520 kb on + strand, within MMJJ_RS00595 at 113.534 kb on + strand, within MMJJ_RS00595 at 113.700 kb on + strand, within MMJJ_RS00595 at 113.703 kb on - strand, within MMJJ_RS00595 at 113.704 kb on + strand, within MMJJ_RS00595 at 113.738 kb on - strand, within MMJJ_RS00595 at 113.768 kb on + strand, within MMJJ_RS00595 at 113.784 kb on - strand, within MMJJ_RS00595 at 113.784 kb on - strand, within MMJJ_RS00595 at 113.784 kb on - strand, within MMJJ_RS00595 at 113.784 kb on - strand, within MMJJ_RS00595 at 113.784 kb on - strand, within MMJJ_RS00595 at 113.921 kb on + strand at 113.921 kb on + strand at 113.921 kb on + strand at 113.946 kb on - strand at 113.980 kb on - strand at 113.981 kb on + strand at 113.981 kb on + strand at 113.998 kb on - strand at 114.047 kb on - strand at 114.048 kb on + strand at 114.048 kb on + strand at 114.050 kb on - strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.309 kb on + strand, within MMJJ_RS00600 at 114.309 kb on + strand, within MMJJ_RS00600 at 114.539 kb on + strand, within MMJJ_RS00600 at 114.610 kb on - strand, within MMJJ_RS00600 at 114.611 kb on + strand, within MMJJ_RS00600 at 114.863 kb on + strand, within MMJJ_RS00600
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA lipolic dropout remove 111,268 + +1.2 111,325 + +0.3 111,339 + -0.7 111,482 - MMJJ_RS00590 0.13 -0.4 111,486 + MMJJ_RS00590 0.14 -2.5 111,513 - MMJJ_RS00590 0.17 -0.2 111,517 + MMJJ_RS00590 0.17 -0.4 111,524 + MMJJ_RS00590 0.18 -1.5 111,564 + MMJJ_RS00590 0.23 +0.1 111,592 - MMJJ_RS00590 0.26 -0.2 111,593 + MMJJ_RS00590 0.26 -0.2 111,627 - MMJJ_RS00590 0.30 -1.6 111,628 + MMJJ_RS00590 0.30 +0.3 111,635 - MMJJ_RS00590 0.31 -0.5 111,636 + MMJJ_RS00590 0.31 -0.5 111,636 + MMJJ_RS00590 0.31 +0.9 111,661 + MMJJ_RS00590 0.34 +1.2 111,665 - MMJJ_RS00590 0.35 +0.6 111,701 - MMJJ_RS00590 0.39 -0.5 111,701 - MMJJ_RS00590 0.39 +0.6 111,702 + MMJJ_RS00590 0.39 -2.4 111,702 + MMJJ_RS00590 0.39 -2.5 111,702 + MMJJ_RS00590 0.39 +0.4 111,702 + MMJJ_RS00590 0.39 -0.6 111,705 - MMJJ_RS00590 0.39 +0.5 111,705 - MMJJ_RS00590 0.39 -0.4 111,705 - MMJJ_RS00590 0.39 +0.2 111,705 - MMJJ_RS00590 0.39 -0.5 111,705 - MMJJ_RS00590 0.39 +0.7 111,706 + MMJJ_RS00590 0.39 +0.3 111,706 + MMJJ_RS00590 0.39 +0.1 111,706 + MMJJ_RS00590 0.39 +0.2 111,706 + MMJJ_RS00590 0.39 +0.5 111,707 - MMJJ_RS00590 0.39 -0.2 111,707 - MMJJ_RS00590 0.39 -0.6 111,708 + MMJJ_RS00590 0.40 -0.1 111,738 + MMJJ_RS00590 0.43 -0.2 111,747 - MMJJ_RS00590 0.44 +1.0 111,748 + MMJJ_RS00590 0.44 -0.6 111,751 + MMJJ_RS00590 0.45 -0.2 111,751 + MMJJ_RS00590 0.45 +0.5 111,764 - +0.9 111,788 - MMJJ_RS00590 0.49 +0.3 111,789 + MMJJ_RS00590 0.49 -0.2 111,789 + MMJJ_RS00590 0.49 -0.8 111,789 + MMJJ_RS00590 0.49 +0.3 111,823 + MMJJ_RS00590 0.53 -0.7 111,826 - MMJJ_RS00590 0.53 -0.9 111,846 - MMJJ_RS00590 0.56 +0.7 111,847 + MMJJ_RS00590 0.56 +1.2 111,847 + MMJJ_RS00590 0.56 -0.0 111,884 - MMJJ_RS00590 0.60 -2.0 111,884 - MMJJ_RS00590 0.60 +0.3 111,884 - MMJJ_RS00590 0.60 +0.7 111,884 - MMJJ_RS00590 0.60 +0.4 111,886 - MMJJ_RS00590 0.60 -0.4 111,886 - MMJJ_RS00590 0.60 +0.9 111,886 - MMJJ_RS00590 0.60 -0.0 111,886 - MMJJ_RS00590 0.60 -0.2 111,886 - MMJJ_RS00590 0.60 +0.5 111,886 - MMJJ_RS00590 0.60 +0.4 111,886 - MMJJ_RS00590 0.60 -0.4 111,887 + MMJJ_RS00590 0.60 +0.2 111,887 + MMJJ_RS00590 0.60 -0.1 111,887 + MMJJ_RS00590 0.60 +0.1 111,887 + MMJJ_RS00590 0.60 -0.5 111,887 + MMJJ_RS00590 0.60 +0.8 111,887 + MMJJ_RS00590 0.60 +0.6 111,887 + MMJJ_RS00590 0.60 +0.7 111,887 + MMJJ_RS00590 0.60 -0.3 111,888 - MMJJ_RS00590 0.61 -1.3 111,888 - MMJJ_RS00590 0.61 +0.3 111,888 - MMJJ_RS00590 0.61 +0.8 111,889 + MMJJ_RS00590 0.61 -0.2 111,912 + MMJJ_RS00590 0.63 -1.6 111,937 - MMJJ_RS00590 0.66 +0.3 111,938 + MMJJ_RS00590 0.66 -1.1 111,949 - MMJJ_RS00590 0.68 +0.0 111,950 + MMJJ_RS00590 0.68 -0.4 111,950 + MMJJ_RS00590 0.68 -1.0 111,961 - MMJJ_RS00590 0.69 -0.2 111,963 - MMJJ_RS00590 0.69 -1.4 111,964 + MMJJ_RS00590 0.69 +0.4 111,968 - MMJJ_RS00590 0.70 -0.4 111,968 - MMJJ_RS00590 0.70 +1.1 111,968 - MMJJ_RS00590 0.70 -1.1 111,968 - MMJJ_RS00590 0.70 -1.5 111,968 - MMJJ_RS00590 0.70 -0.8 111,968 - MMJJ_RS00590 0.70 -0.0 111,968 - MMJJ_RS00590 0.70 +0.0 111,968 - MMJJ_RS00590 0.70 -0.8 111,968 - MMJJ_RS00590 0.70 -0.6 111,968 - MMJJ_RS00590 0.70 -0.8 111,969 + MMJJ_RS00590 0.70 +0.0 111,969 + MMJJ_RS00590 0.70 +0.8 111,969 + MMJJ_RS00590 0.70 +0.7 111,969 + MMJJ_RS00590 0.70 -0.8 111,969 + MMJJ_RS00590 0.70 -0.6 111,969 + MMJJ_RS00590 0.70 -1.1 111,969 + MMJJ_RS00590 0.70 -1.2 111,969 + MMJJ_RS00590 0.70 +0.8 111,971 - MMJJ_RS00590 0.70 -0.0 111,971 - MMJJ_RS00590 0.70 -0.6 111,971 - MMJJ_RS00590 0.70 -0.2 111,972 + MMJJ_RS00590 0.70 -0.8 111,974 + MMJJ_RS00590 0.70 +0.4 111,986 - MMJJ_RS00590 0.72 -0.9 111,986 - MMJJ_RS00590 0.72 -0.6 111,987 + MMJJ_RS00590 0.72 -0.6 111,987 + MMJJ_RS00590 0.72 -0.0 111,987 + MMJJ_RS00590 0.72 +0.7 111,988 - MMJJ_RS00590 0.72 -0.0 111,988 - MMJJ_RS00590 0.72 -1.1 111,988 - MMJJ_RS00590 0.72 -1.1 111,988 - MMJJ_RS00590 0.72 -0.7 111,988 - MMJJ_RS00590 0.72 +0.6 111,989 + MMJJ_RS00590 0.72 +0.8 111,989 + MMJJ_RS00590 0.72 +0.4 111,989 + MMJJ_RS00590 0.72 +0.5 112,023 + MMJJ_RS00590 0.76 -0.7 112,069 + MMJJ_RS00590 0.82 +0.5 112,092 + MMJJ_RS00590 0.84 +0.5 112,101 - MMJJ_RS00590 0.85 +0.0 112,131 + MMJJ_RS00590 0.89 +1.1 112,222 + +1.5 112,230 - -0.2 112,239 + +0.2 112,278 + +0.3 112,279 - -0.2 112,280 + +0.8 112,290 + -0.1 112,325 + +0.1 112,328 - +0.5 112,334 + -0.1 112,387 + +0.5 112,387 + +0.7 112,402 - -0.2 112,403 + -0.2 112,403 + -0.6 112,405 + -0.5 112,406 - +0.3 112,406 - -0.3 112,407 + -0.1 112,407 + -2.3 112,407 + +0.2 112,407 + -0.4 112,450 + MMJJ_RS00595 0.12 -1.0 112,450 + MMJJ_RS00595 0.12 -0.4 112,471 + MMJJ_RS00595 0.13 +0.3 112,507 - MMJJ_RS00595 0.16 -0.6 112,532 - MMJJ_RS00595 0.17 +0.3 112,532 - MMJJ_RS00595 0.17 -0.0 112,532 - MMJJ_RS00595 0.17 +0.3 112,585 + MMJJ_RS00595 0.20 -4.4 112,689 - MMJJ_RS00595 0.26 +0.6 112,696 - MMJJ_RS00595 0.27 +0.0 112,712 - MMJJ_RS00595 0.27 +1.1 112,749 - MMJJ_RS00595 0.30 -0.3 112,867 - MMJJ_RS00595 0.36 -1.5 112,868 + MMJJ_RS00595 0.37 -0.1 112,896 + MMJJ_RS00595 0.38 -1.7 112,896 + MMJJ_RS00595 0.38 +1.1 112,896 + MMJJ_RS00595 0.38 +0.4 112,908 + MMJJ_RS00595 0.39 -0.1 113,006 + MMJJ_RS00595 0.45 -0.4 113,029 - MMJJ_RS00595 0.46 -0.5 113,030 + MMJJ_RS00595 0.46 -0.3 113,092 - MMJJ_RS00595 0.50 +0.0 113,173 - MMJJ_RS00595 0.54 +0.2 113,174 + MMJJ_RS00595 0.54 -0.0 113,355 + MMJJ_RS00595 0.65 -0.4 113,355 + MMJJ_RS00595 0.65 +0.4 113,364 - MMJJ_RS00595 0.65 +0.1 113,425 - MMJJ_RS00595 0.69 -0.7 113,431 - MMJJ_RS00595 0.69 +0.3 113,517 - MMJJ_RS00595 0.74 -0.4 113,517 - MMJJ_RS00595 0.74 -0.1 113,518 + MMJJ_RS00595 0.74 -1.7 113,519 - MMJJ_RS00595 0.74 -1.4 113,520 + MMJJ_RS00595 0.75 -0.1 113,520 + MMJJ_RS00595 0.75 +0.1 113,534 + MMJJ_RS00595 0.75 -0.6 113,700 + MMJJ_RS00595 0.85 +0.9 113,703 - MMJJ_RS00595 0.85 +0.3 113,704 + MMJJ_RS00595 0.85 +0.9 113,738 - MMJJ_RS00595 0.87 -0.2 113,768 + MMJJ_RS00595 0.89 -1.1 113,784 - MMJJ_RS00595 0.90 +0.1 113,784 - MMJJ_RS00595 0.90 -0.1 113,784 - MMJJ_RS00595 0.90 -0.4 113,784 - MMJJ_RS00595 0.90 +0.3 113,784 - MMJJ_RS00595 0.90 -0.1 113,921 + +0.3 113,921 + -0.3 113,921 + -1.0 113,946 - -0.1 113,980 - -0.6 113,981 + +0.2 113,981 + -0.5 113,998 - +0.2 114,047 - -0.5 114,048 + -0.4 114,048 + +0.1 114,050 - +0.0 114,051 + +0.7 114,051 + +0.8 114,309 + MMJJ_RS00600 0.29 -3.3 114,309 + MMJJ_RS00600 0.29 -2.0 114,539 + MMJJ_RS00600 0.54 -3.0 114,610 - MMJJ_RS00600 0.62 -3.1 114,611 + MMJJ_RS00600 0.62 -3.4 114,863 + MMJJ_RS00600 0.89 -1.7
Or see this region's nucleotide sequence