Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06472

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06471 and H281DRAFT_06472 are separated by 585 nucleotidesH281DRAFT_06472 and H281DRAFT_06473 are separated by 38 nucleotides H281DRAFT_06471: H281DRAFT_06471 - sulfonate transport system substrate-binding protein, at 7,886 to 8,872 _06471 H281DRAFT_06472: H281DRAFT_06472 - hypothetical protein, at 9,458 to 10,009 _06472 H281DRAFT_06473: H281DRAFT_06473 - NTE family protein, at 10,048 to 11,001 _06473 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2at 8.484 kb on - strand, within H281DRAFT_06471at 8.798 kb on + strandat 8.799 kb on - strandat 8.949 kb on + strandat 8.990 kb on - strandat 9.114 kb on + strandat 9.115 kb on - strandat 9.373 kb on + strandat 9.672 kb on - strand, within H281DRAFT_06472at 9.674 kb on - strand, within H281DRAFT_06472at 9.724 kb on + strand, within H281DRAFT_06472at 9.725 kb on - strand, within H281DRAFT_06472at 9.729 kb on - strand, within H281DRAFT_06472at 9.729 kb on - strand, within H281DRAFT_06472at 9.755 kb on - strandat 9.971 kb on + strandat 9.971 kb on + strandat 10.233 kb on - strand, within H281DRAFT_06473at 10.508 kb on + strand, within H281DRAFT_06473at 10.961 kb on - strandat 10.961 kb on - strandat 10.962 kb on + strandat 10.962 kb on + strandat 10.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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8,484 - H281DRAFT_06471 0.61 +0.8
8,798 + +0.1
8,799 - -0.1
8,949 + +0.2
8,990 - +0.7
9,114 + +0.7
9,115 - -0.5
9,373 + +0.4
9,672 - H281DRAFT_06472 0.39 -0.4
9,674 - H281DRAFT_06472 0.39 +0.0
9,724 + H281DRAFT_06472 0.48 -2.0
9,725 - H281DRAFT_06472 0.48 -0.8
9,729 - H281DRAFT_06472 0.49 -0.0
9,729 - H281DRAFT_06472 0.49 +0.3
9,755 - +0.8
9,971 + -1.6
9,971 + +0.2
10,233 - H281DRAFT_06473 0.19 -0.6
10,508 + H281DRAFT_06473 0.48 +0.7
10,961 - +1.5
10,961 - +0.6
10,962 + +0.3
10,962 + +2.1
10,963 - -0.2

Or see this region's nucleotide sequence