Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06449 and H281DRAFT_06450 are separated by 39 nucleotides
H281DRAFT_06449: H281DRAFT_06449 - hypothetical protein, at 55,416 to 55,631
_06449
H281DRAFT_06450: H281DRAFT_06450 - ATP-dependent Clp protease ATP-binding subunit ClpC, at 55,671 to 58,448
_06450
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.431 kb on + strand at 54.431 kb on + strand at 54.432 kb on - strand at 54.441 kb on + strand at 54.613 kb on - strand at 54.756 kb on - strand at 54.784 kb on + strand at 54.784 kb on + strand at 54.785 kb on - strand at 54.817 kb on + strand at 54.817 kb on + strand at 55.168 kb on + strand at 55.215 kb on + strand at 55.215 kb on + strand at 55.216 kb on - strand at 55.300 kb on - strand at 55.331 kb on + strand at 55.374 kb on + strand at 55.380 kb on - strand at 55.415 kb on + strand at 55.447 kb on - strand, within H281DRAFT_06449 at 55.447 kb on - strand, within H281DRAFT_06449 at 55.550 kb on + strand, within H281DRAFT_06449 at 55.550 kb on + strand, within H281DRAFT_06449 at 55.550 kb on + strand, within H281DRAFT_06449 at 55.550 kb on + strand, within H281DRAFT_06449 at 55.550 kb on + strand, within H281DRAFT_06449 at 55.551 kb on - strand, within H281DRAFT_06449 at 55.632 kb on + strand at 55.651 kb on + strand at 55.651 kb on + strand at 55.652 kb on - strand at 55.672 kb on + strand at 55.672 kb on + strand at 55.814 kb on - strand at 56.293 kb on - strand, within H281DRAFT_06450 at 56.305 kb on - strand, within H281DRAFT_06450 at 56.360 kb on - strand, within H281DRAFT_06450 at 56.414 kb on - strand, within H281DRAFT_06450 at 56.613 kb on + strand, within H281DRAFT_06450
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 54,431 + -2.8 54,431 + +1.1 54,432 - +2.5 54,441 + +0.4 54,613 - -0.2 54,756 - -0.1 54,784 + -2.2 54,784 + -1.3 54,785 - -1.7 54,817 + +0.6 54,817 + +0.0 55,168 + +1.2 55,215 + +0.1 55,215 + +0.8 55,216 - +0.2 55,300 - +0.0 55,331 + -0.2 55,374 + +0.7 55,380 - +0.2 55,415 + -0.4 55,447 - H281DRAFT_06449 0.14 +0.9 55,447 - H281DRAFT_06449 0.14 +0.6 55,550 + H281DRAFT_06449 0.62 +0.0 55,550 + H281DRAFT_06449 0.62 -0.5 55,550 + H281DRAFT_06449 0.62 +0.1 55,550 + H281DRAFT_06449 0.62 +0.6 55,550 + H281DRAFT_06449 0.62 -0.1 55,551 - H281DRAFT_06449 0.62 +0.6 55,632 + -0.0 55,651 + -0.3 55,651 + +0.1 55,652 - +1.1 55,672 + +0.4 55,672 + -0.7 55,814 - -0.9 56,293 - H281DRAFT_06450 0.22 +0.8 56,305 - H281DRAFT_06450 0.23 -1.3 56,360 - H281DRAFT_06450 0.25 -0.4 56,414 - H281DRAFT_06450 0.27 +1.7 56,613 + H281DRAFT_06450 0.34 +0.4
Or see this region's nucleotide sequence