Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06418 and H281DRAFT_06419 overlap by 4 nucleotides H281DRAFT_06419 and H281DRAFT_06420 are separated by 464 nucleotides
H281DRAFT_06418: H281DRAFT_06418 - RES domain-containing protein, at 18,131 to 18,604
_06418
H281DRAFT_06419: H281DRAFT_06419 - putative toxin-antitoxin system antitoxin component, TIGR02293 family, at 18,601 to 19,029
_06419
H281DRAFT_06420: H281DRAFT_06420 - hypothetical protein, at 19,494 to 19,649
_06420
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.502 kb on - strand, within H281DRAFT_06418 at 18.572 kb on - strand at 18.572 kb on - strand at 18.572 kb on - strand at 18.618 kb on - strand at 18.837 kb on - strand, within H281DRAFT_06419 at 19.044 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.177 kb on - strand at 19.200 kb on + strand at 19.215 kb on + strand at 19.215 kb on + strand at 19.216 kb on - strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.235 kb on + strand at 19.288 kb on - strand at 19.288 kb on - strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.316 kb on + strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.317 kb on - strand at 19.434 kb on - strand at 19.434 kb on - strand at 19.500 kb on + strand at 19.500 kb on + strand at 19.501 kb on - strand at 19.501 kb on - strand at 19.501 kb on - strand at 19.505 kb on + strand at 19.505 kb on + strand at 19.665 kb on + strand at 19.669 kb on + strand at 19.669 kb on + strand at 19.669 kb on + strand at 19.670 kb on - strand at 19.670 kb on - strand at 19.731 kb on + strand at 19.732 kb on - strand at 19.750 kb on + strand at 19.751 kb on - strand at 20.107 kb on - strand at 20.112 kb on - strand at 20.162 kb on + strand at 20.264 kb on + strand at 20.265 kb on - strand at 20.265 kb on - strand at 20.327 kb on + strand at 20.328 kb on - strand at 20.328 kb on - strand at 20.356 kb on + strand at 20.356 kb on + strand at 20.359 kb on - strand at 20.389 kb on + strand at 20.389 kb on + strand at 20.390 kb on - strand at 20.439 kb on - strand at 20.439 kb on - strand at 20.461 kb on + strand at 20.462 kb on - strand at 20.477 kb on - strand at 20.479 kb on + strand at 20.480 kb on - strand at 20.486 kb on - strand at 20.491 kb on + strand at 20.492 kb on - strand at 20.539 kb on - strand at 20.539 kb on - strand at 20.539 kb on - strand at 20.566 kb on - strand at 20.589 kb on + strand at 20.595 kb on + strand at 20.596 kb on - strand at 20.596 kb on - strand at 20.615 kb on - strand at 20.637 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 18,502 - H281DRAFT_06418 0.78 -0.2 18,572 - -0.7 18,572 - -0.8 18,572 - +1.4 18,618 - +0.3 18,837 - H281DRAFT_06419 0.55 -1.1 19,044 - -1.7 19,177 - +0.8 19,177 - +0.1 19,177 - -0.8 19,177 - -0.4 19,177 - -0.6 19,177 - +1.5 19,200 + +0.3 19,215 + -1.2 19,215 + +0.5 19,216 - -1.1 19,235 + -0.5 19,235 + +0.8 19,235 + +0.2 19,235 + -2.7 19,288 - +1.5 19,288 - -0.1 19,316 + +0.7 19,316 + -0.2 19,316 + +0.0 19,316 + -0.8 19,316 + +0.5 19,316 + -0.7 19,316 + +0.1 19,316 + +0.4 19,317 - +0.2 19,317 - +0.9 19,317 - +0.3 19,317 - -0.3 19,434 - +0.7 19,434 - -0.1 19,500 + +0.1 19,500 + -0.7 19,501 - -1.1 19,501 - -0.7 19,501 - -0.0 19,505 + +0.9 19,505 + +0.3 19,665 + +1.2 19,669 + +0.4 19,669 + -0.3 19,669 + +0.3 19,670 - +0.2 19,670 - -0.7 19,731 + +0.0 19,732 - +0.3 19,750 + -1.7 19,751 - +1.4 20,107 - +1.1 20,112 - +0.2 20,162 + -0.2 20,264 + -0.7 20,265 - +0.2 20,265 - -0.7 20,327 + +0.5 20,328 - -0.3 20,328 - -0.2 20,356 + -1.2 20,356 + +2.1 20,359 - +0.3 20,389 + -0.7 20,389 + -0.5 20,390 - +0.4 20,439 - +0.5 20,439 - +0.8 20,461 + -0.1 20,462 - +0.8 20,477 - +0.5 20,479 + -2.9 20,480 - +0.5 20,486 - +0.0 20,491 + -1.4 20,492 - +0.6 20,539 - -0.2 20,539 - -0.7 20,539 - -0.2 20,566 - +0.3 20,589 + -0.1 20,595 + +0.5 20,596 - +0.3 20,596 - -1.4 20,615 - +4.0 20,637 + -0.1
Or see this region's nucleotide sequence