Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06333

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06331 and H281DRAFT_06332 overlap by 16 nucleotidesH281DRAFT_06332 and H281DRAFT_06333 overlap by 4 nucleotidesH281DRAFT_06333 and H281DRAFT_06334 overlap by 1 nucleotidesH281DRAFT_06334 and H281DRAFT_06335 overlap by 4 nucleotides H281DRAFT_06331: H281DRAFT_06331 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 4,582 to 5,973 _06331 H281DRAFT_06332: H281DRAFT_06332 - Uncharacterized anaerobic dehydrogenase, at 5,958 to 6,272 _06332 H281DRAFT_06333: H281DRAFT_06333 - peptide/nickel transport system ATP-binding protein, at 6,269 to 8,113 _06333 H281DRAFT_06334: H281DRAFT_06334 - peptide/nickel transport system permease protein, at 8,113 to 9,060 _06334 H281DRAFT_06335: H281DRAFT_06335 - peptide/nickel transport system permease protein, at 9,057 to 10,010 _06335 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5.471 kb on + strand, within H281DRAFT_06331at 5.471 kb on + strand, within H281DRAFT_06331at 5.472 kb on - strand, within H281DRAFT_06331at 5.489 kb on + strand, within H281DRAFT_06331at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_06331at 5.579 kb on + strand, within H281DRAFT_06331at 5.580 kb on - strand, within H281DRAFT_06331at 5.709 kb on + strand, within H281DRAFT_06331at 5.816 kb on + strand, within H281DRAFT_06331at 5.852 kb on - strandat 5.852 kb on - strandat 5.852 kb on - strandat 5.959 kb on + strandat 5.974 kb on - strandat 6.377 kb on - strandat 6.385 kb on + strandat 6.385 kb on + strandat 6.669 kb on + strand, within H281DRAFT_06333at 6.670 kb on - strand, within H281DRAFT_06333at 6.927 kb on + strand, within H281DRAFT_06333at 6.928 kb on - strand, within H281DRAFT_06333at 7.476 kb on + strand, within H281DRAFT_06333at 7.476 kb on + strand, within H281DRAFT_06333at 7.477 kb on - strand, within H281DRAFT_06333at 7.825 kb on - strand, within H281DRAFT_06333at 8.402 kb on + strand, within H281DRAFT_06334at 8.441 kb on + strand, within H281DRAFT_06334at 8.442 kb on - strand, within H281DRAFT_06334at 8.502 kb on - strand, within H281DRAFT_06334at 8.792 kb on + strand, within H281DRAFT_06334at 8.793 kb on - strand, within H281DRAFT_06334at 8.835 kb on - strand, within H281DRAFT_06334at 8.835 kb on - strand, within H281DRAFT_06334at 9.008 kb on + strandat 9.010 kb on + strandat 9.011 kb on - strandat 9.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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5,471 + H281DRAFT_06331 0.64 +0.3
5,471 + H281DRAFT_06331 0.64 -0.3
5,472 - H281DRAFT_06331 0.64 +1.0
5,489 + H281DRAFT_06331 0.65 +0.7
5,579 + +0.7
5,579 + H281DRAFT_06331 0.72 -0.2
5,579 + H281DRAFT_06331 0.72 -0.3
5,580 - H281DRAFT_06331 0.72 +1.3
5,709 + H281DRAFT_06331 0.81 -1.6
5,816 + H281DRAFT_06331 0.89 +0.5
5,852 - +0.3
5,852 - -1.0
5,852 - -0.1
5,959 + -1.0
5,974 - +0.7
6,377 - +2.8
6,385 + -0.4
6,385 + +0.3
6,669 + H281DRAFT_06333 0.22 -0.4
6,670 - H281DRAFT_06333 0.22 +0.0
6,927 + H281DRAFT_06333 0.36 -0.5
6,928 - H281DRAFT_06333 0.36 +0.5
7,476 + H281DRAFT_06333 0.65 +0.1
7,476 + H281DRAFT_06333 0.65 +1.9
7,477 - H281DRAFT_06333 0.65 +1.2
7,825 - H281DRAFT_06333 0.84 +0.2
8,402 + H281DRAFT_06334 0.30 -0.5
8,441 + H281DRAFT_06334 0.35 +2.3
8,442 - H281DRAFT_06334 0.35 -0.3
8,502 - H281DRAFT_06334 0.41 +0.2
8,792 + H281DRAFT_06334 0.72 -2.1
8,793 - H281DRAFT_06334 0.72 -0.3
8,835 - H281DRAFT_06334 0.76 -2.3
8,835 - H281DRAFT_06334 0.76 -0.3
9,008 + -0.9
9,010 + -1.1
9,011 - +1.1
9,046 - +0.2

Or see this region's nucleotide sequence