Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05915

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05914 and H281DRAFT_05915 are separated by 81 nucleotidesH281DRAFT_05915 and H281DRAFT_05916 are separated by 265 nucleotidesH281DRAFT_05916 and H281DRAFT_05917 are separated by 53 nucleotidesH281DRAFT_05917 and H281DRAFT_05918 are separated by 45 nucleotides H281DRAFT_05914: H281DRAFT_05914 - hypothetical protein, at 48,065 to 48,724 _05914 H281DRAFT_05915: H281DRAFT_05915 - hypothetical protein, at 48,806 to 49,144 _05915 H281DRAFT_05916: H281DRAFT_05916 - hypothetical protein, at 49,410 to 49,718 _05916 H281DRAFT_05917: H281DRAFT_05917 - Glycine zipper 2TM domain, at 49,772 to 50,023 _05917 H281DRAFT_05918: H281DRAFT_05918 - Fumarylacetoacetate (FAA) hydrolase family protein, at 50,069 to 51,247 _05918 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 48.076 kb on + strandat 48.579 kb on + strand, within H281DRAFT_05914at 48.580 kb on - strand, within H281DRAFT_05914at 48.708 kb on + strandat 48.999 kb on + strand, within H281DRAFT_05915at 49.183 kb on - strandat 49.183 kb on - strandat 49.307 kb on + strandat 49.353 kb on - strandat 49.432 kb on + strandat 49.433 kb on - strandat 49.435 kb on + strandat 49.436 kb on - strandat 49.567 kb on - strand, within H281DRAFT_05916at 49.567 kb on - strand, within H281DRAFT_05916at 49.763 kb on + strandat 49.764 kb on - strandat 49.893 kb on - strand, within H281DRAFT_05917at 50.022 kb on - strandat 50.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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48,076 + +0.7
48,579 + H281DRAFT_05914 0.78 -0.3
48,580 - H281DRAFT_05914 0.78 +0.3
48,708 + +1.3
48,999 + H281DRAFT_05915 0.57 +0.6
49,183 - -2.2
49,183 - +0.4
49,307 + -0.1
49,353 - -0.3
49,432 + -0.1
49,433 - -0.3
49,435 + +0.3
49,436 - +1.7
49,567 - H281DRAFT_05916 0.51 +0.1
49,567 - H281DRAFT_05916 0.51 +0.1
49,763 + +0.4
49,764 - +0.3
49,893 - H281DRAFT_05917 0.48 -0.7
50,022 - +0.3
50,070 + +0.0

Or see this region's nucleotide sequence