Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05438

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05437 and H281DRAFT_05438 are separated by 812 nucleotidesH281DRAFT_05438 and H281DRAFT_05439 are separated by 30 nucleotidesH281DRAFT_05439 and H281DRAFT_05440 are separated by 146 nucleotides H281DRAFT_05437: H281DRAFT_05437 - Sugar phosphate permease, at 14,762 to 16,114 _05437 H281DRAFT_05438: H281DRAFT_05438 - transcriptional regulator, IclR family, at 16,927 to 17,739 _05438 H281DRAFT_05439: H281DRAFT_05439 - Catechol 2,3-dioxygenase, at 17,770 to 18,468 _05439 H281DRAFT_05440: H281DRAFT_05440 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 18,615 to 19,466 _05440 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1 2 3 4at 16.128 kb on - strandat 16.202 kb on + strandat 16.202 kb on + strandat 16.233 kb on - strandat 16.349 kb on + strandat 16.393 kb on - strandat 16.446 kb on - strandat 16.612 kb on + strandat 16.612 kb on + strandat 16.621 kb on + strandat 16.622 kb on - strandat 16.714 kb on - strandat 16.817 kb on + strandat 16.915 kb on + strandat 16.915 kb on + strandat 16.915 kb on + strandat 16.916 kb on - strandat 17.277 kb on - strand, within H281DRAFT_05438at 17.548 kb on + strand, within H281DRAFT_05438at 17.710 kb on + strandat 17.710 kb on + strandat 17.711 kb on - strandat 17.711 kb on - strandat 18.054 kb on - strand, within H281DRAFT_05439at 18.413 kb on + strandat 18.413 kb on + strandat 18.413 kb on + strandat 18.424 kb on - strandat 18.431 kb on - strandat 18.482 kb on - strandat 18.487 kb on + strandat 18.700 kb on + strandat 18.711 kb on + strand, within H281DRAFT_05440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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16,128 - +0.6
16,202 + -0.4
16,202 + +1.0
16,233 - -0.3
16,349 + +0.7
16,393 - -0.1
16,446 - +0.5
16,612 + -0.5
16,612 + +0.7
16,621 + +0.3
16,622 - +0.3
16,714 - -0.1
16,817 + +0.5
16,915 + +0.2
16,915 + +0.6
16,915 + +0.0
16,916 - +0.0
17,277 - H281DRAFT_05438 0.43 +0.8
17,548 + H281DRAFT_05438 0.76 +1.9
17,710 + +0.0
17,710 + +0.6
17,711 - -0.5
17,711 - -0.5
18,054 - H281DRAFT_05439 0.41 +0.1
18,413 + -0.3
18,413 + -0.1
18,413 + -1.3
18,424 - -0.6
18,431 - +0.3
18,482 - +0.3
18,487 + +3.8
18,700 + +0.2
18,711 + H281DRAFT_05440 0.11 +0.5

Or see this region's nucleotide sequence