Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05000

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04998 and H281DRAFT_04999 overlap by 4 nucleotidesH281DRAFT_04999 and H281DRAFT_05000 overlap by 4 nucleotidesH281DRAFT_05000 and H281DRAFT_05001 overlap by 4 nucleotidesH281DRAFT_05001 and H281DRAFT_05002 overlap by 16 nucleotides H281DRAFT_04998: H281DRAFT_04998 - type III secretion protein T, at 184,543 to 185,394 _04998 H281DRAFT_04999: H281DRAFT_04999 - type III secretion protein HrpB7, at 185,391 to 185,885 _04999 H281DRAFT_05000: H281DRAFT_05000 - ATP synthase in type III secretion protein N, at 185,882 to 187,276 _05000 H281DRAFT_05001: H281DRAFT_05001 - type III secretion protein L, at 187,273 to 188,052 _05001 H281DRAFT_05002: H281DRAFT_05002 - type III secretion protein (HrpB4), at 188,037 to 188,852 _05002 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -2 -1 0 1at 184.932 kb on - strand, within H281DRAFT_04998at 185.634 kb on - strand, within H281DRAFT_04999at 185.711 kb on - strand, within H281DRAFT_04999at 185.886 kb on - strandat 185.943 kb on + strandat 186.031 kb on - strand, within H281DRAFT_05000at 186.031 kb on - strand, within H281DRAFT_05000at 186.501 kb on + strand, within H281DRAFT_05000at 187.568 kb on + strand, within H281DRAFT_05001at 187.569 kb on - strand, within H281DRAFT_05001at 188.249 kb on + strand, within H281DRAFT_05002

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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184,932 - H281DRAFT_04998 0.46 +0.1
185,634 - H281DRAFT_04999 0.49 -1.1
185,711 - H281DRAFT_04999 0.65 +0.9
185,886 - +0.3
185,943 + +0.1
186,031 - H281DRAFT_05000 0.11 +0.7
186,031 - H281DRAFT_05000 0.11 +0.6
186,501 + H281DRAFT_05000 0.44 +0.2
187,568 + H281DRAFT_05001 0.38 -2.4
187,569 - H281DRAFT_05001 0.38 -1.8
188,249 + H281DRAFT_05002 0.26 -0.1

Or see this region's nucleotide sequence