Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04790

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04789 and H281DRAFT_04790 are separated by 87 nucleotides H281DRAFT_04789: H281DRAFT_04789 - hypothetical protein, at 213,559 to 214,626 _04789 H281DRAFT_04790: H281DRAFT_04790 - hypothetical protein, at 214,714 to 215,349 _04790 Position (kb) 214 215 216Strain fitness (log2 ratio) -1 0 1at 213.880 kb on + strand, within H281DRAFT_04789at 214.291 kb on + strand, within H281DRAFT_04789at 214.367 kb on + strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.368 kb on - strand, within H281DRAFT_04789at 214.731 kb on - strandat 214.851 kb on + strand, within H281DRAFT_04790at 215.250 kb on - strand, within H281DRAFT_04790at 215.334 kb on - strandat 215.412 kb on - strandat 215.474 kb on + strandat 215.489 kb on + strandat 215.493 kb on - strandat 215.661 kb on + strandat 215.681 kb on - strandat 215.683 kb on - strandat 215.788 kb on + strandat 215.796 kb on + strandat 215.803 kb on + strandat 215.808 kb on - strandat 215.878 kb on - strandat 216.343 kb on + strandat 216.348 kb on - strandat 216.348 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
remove
213,880 + H281DRAFT_04789 0.30 -0.9
214,291 + H281DRAFT_04789 0.69 -0.9
214,367 + H281DRAFT_04789 0.76 -1.2
214,368 - H281DRAFT_04789 0.76 -0.0
214,368 - H281DRAFT_04789 0.76 +0.7
214,368 - H281DRAFT_04789 0.76 +0.3
214,731 - -0.4
214,851 + H281DRAFT_04790 0.22 +0.3
215,250 - H281DRAFT_04790 0.84 +0.4
215,334 - +0.5
215,412 - -0.1
215,474 + +0.1
215,489 + +1.3
215,493 - +0.3
215,661 + -0.2
215,681 - +0.2
215,683 - +0.1
215,788 + -1.3
215,796 + -0.2
215,803 + -0.3
215,808 - -0.7
215,878 - +0.1
216,343 + -0.3
216,348 - -0.2
216,348 - -1.0

Or see this region's nucleotide sequence