Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04445 and H281DRAFT_04446 are separated by 235 nucleotides H281DRAFT_04446 and H281DRAFT_04447 are separated by 221 nucleotides
H281DRAFT_04445: H281DRAFT_04445 - alanyl-tRNA synthetase, at 163,457 to 166,081
_04445
H281DRAFT_04446: H281DRAFT_04446 - transcriptional regulator, LysR family, at 166,317 to 167,276
_04446
H281DRAFT_04447: H281DRAFT_04447 - Uncharacterised MFS-type transporter YbfB, at 167,498 to 169,060
_04447
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.434 kb on - strand, within H281DRAFT_04446 at 166.434 kb on - strand, within H281DRAFT_04446 at 166.612 kb on + strand, within H281DRAFT_04446 at 166.613 kb on - strand, within H281DRAFT_04446 at 166.613 kb on - strand, within H281DRAFT_04446 at 166.660 kb on + strand, within H281DRAFT_04446 at 166.676 kb on - strand, within H281DRAFT_04446 at 166.676 kb on - strand, within H281DRAFT_04446 at 167.132 kb on + strand, within H281DRAFT_04446 at 167.339 kb on + strand at 167.339 kb on + strand at 167.339 kb on + strand at 167.340 kb on - strand at 167.340 kb on - strand at 167.342 kb on + strand at 167.342 kb on + strand at 167.343 kb on - strand at 167.343 kb on - strand at 167.343 kb on - strand at 167.348 kb on + strand at 167.348 kb on + strand at 167.349 kb on - strand at 167.349 kb on - strand at 167.542 kb on + strand at 167.542 kb on + strand at 167.681 kb on + strand, within H281DRAFT_04447 at 167.691 kb on - strand, within H281DRAFT_04447 at 167.760 kb on + strand, within H281DRAFT_04447 at 167.761 kb on - strand, within H281DRAFT_04447 at 167.761 kb on - strand, within H281DRAFT_04447 at 167.931 kb on - strand, within H281DRAFT_04447 at 168.124 kb on - strand, within H281DRAFT_04447 at 168.124 kb on - strand, within H281DRAFT_04447 at 168.181 kb on - strand, within H281DRAFT_04447 at 168.214 kb on + strand, within H281DRAFT_04447 at 168.215 kb on - strand, within H281DRAFT_04447 at 168.215 kb on - strand, within H281DRAFT_04447 at 168.215 kb on - strand, within H281DRAFT_04447
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 166,434 - H281DRAFT_04446 0.12 -0.4 166,434 - H281DRAFT_04446 0.12 -1.2 166,612 + H281DRAFT_04446 0.31 +0.6 166,613 - H281DRAFT_04446 0.31 +2.4 166,613 - H281DRAFT_04446 0.31 -0.1 166,660 + H281DRAFT_04446 0.36 -1.8 166,676 - H281DRAFT_04446 0.37 -0.0 166,676 - H281DRAFT_04446 0.37 +0.5 167,132 + H281DRAFT_04446 0.85 -0.6 167,339 + +0.6 167,339 + -0.1 167,339 + -1.2 167,340 - +0.5 167,340 - -0.5 167,342 + +0.8 167,342 + -1.7 167,343 - +0.1 167,343 - -0.4 167,343 - -0.2 167,348 + -0.6 167,348 + +0.1 167,349 - -0.4 167,349 - +0.5 167,542 + -0.6 167,542 + +1.7 167,681 + H281DRAFT_04447 0.12 +0.6 167,691 - H281DRAFT_04447 0.12 +0.9 167,760 + H281DRAFT_04447 0.17 -0.1 167,761 - H281DRAFT_04447 0.17 +1.1 167,761 - H281DRAFT_04447 0.17 +0.1 167,931 - H281DRAFT_04447 0.28 +0.4 168,124 - H281DRAFT_04447 0.40 +0.1 168,124 - H281DRAFT_04447 0.40 -0.7 168,181 - H281DRAFT_04447 0.44 +0.2 168,214 + H281DRAFT_04447 0.46 -1.3 168,215 - H281DRAFT_04447 0.46 -1.2 168,215 - H281DRAFT_04447 0.46 -2.4 168,215 - H281DRAFT_04447 0.46 +0.4
Or see this region's nucleotide sequence