Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04300

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04298 and H281DRAFT_04299 are separated by 1 nucleotidesH281DRAFT_04299 and H281DRAFT_04300 overlap by 4 nucleotidesH281DRAFT_04300 and H281DRAFT_04301 are separated by 144 nucleotidesH281DRAFT_04301 and H281DRAFT_04302 are separated by 1 nucleotides H281DRAFT_04298: H281DRAFT_04298 - Putative signal transducing protein, at 13,035 to 13,355 _04298 H281DRAFT_04299: H281DRAFT_04299 - ribosome biogenesis GTPase, at 13,357 to 14,349 _04299 H281DRAFT_04300: H281DRAFT_04300 - STE24 endopeptidase, at 14,346 to 15,605 _04300 H281DRAFT_04301: H281DRAFT_04301 - oligoribonuclease, at 15,750 to 16,361 _04301 H281DRAFT_04302: H281DRAFT_04302 - molybdopterin adenylyltransferase, at 16,363 to 17,046 _04302 Position (kb) 14 15 16Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 13.355 kb on + strandat 13.355 kb on + strandat 13.356 kb on - strandat 14.399 kb on - strandat 14.402 kb on - strandat 14.402 kb on - strandat 14.453 kb on - strandat 14.619 kb on - strandat 14.657 kb on - strand, within H281DRAFT_04300at 14.657 kb on - strand, within H281DRAFT_04300at 14.864 kb on - strand, within H281DRAFT_04300at 15.434 kb on - strand, within H281DRAFT_04300at 15.622 kb on - strandat 15.626 kb on - strandat 15.636 kb on + strandat 15.637 kb on - strandat 15.638 kb on + strandat 15.638 kb on + strandat 16.359 kb on + strandat 16.359 kb on + strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.360 kb on - strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.364 kb on + strandat 16.365 kb on - strandat 16.437 kb on - strand, within H281DRAFT_04302

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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13,355 + +0.9
13,355 + +0.5
13,356 - +0.0
14,399 - -1.3
14,402 - +4.3
14,402 - -0.0
14,453 - -1.0
14,619 - -1.8
14,657 - H281DRAFT_04300 0.25 +0.4
14,657 - H281DRAFT_04300 0.25 +1.4
14,864 - H281DRAFT_04300 0.41 +1.3
15,434 - H281DRAFT_04300 0.86 -0.0
15,622 - +0.5
15,626 - +0.4
15,636 + -1.4
15,637 - -1.4
15,638 + -1.8
15,638 + +1.7
16,359 + -0.1
16,359 + +0.2
16,360 - +0.3
16,360 - +1.1
16,360 - +0.1
16,360 - -2.1
16,360 - +1.5
16,360 - -1.1
16,360 - +1.0
16,360 - -0.2
16,364 + +0.4
16,364 + -1.8
16,364 + -0.8
16,364 + +0.6
16,364 + -0.3
16,364 + +0.1
16,364 + -0.3
16,365 - +0.6
16,437 - H281DRAFT_04302 0.11 +0.6

Or see this region's nucleotide sequence