Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03988

Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03986 and H281DRAFT_03987 are separated by 80 nucleotidesH281DRAFT_03987 and H281DRAFT_03988 are separated by 187 nucleotidesH281DRAFT_03988 and H281DRAFT_03989 are separated by 201 nucleotidesH281DRAFT_03989 and H281DRAFT_03990 overlap by 26 nucleotides H281DRAFT_03986: H281DRAFT_03986 - Putative Ca2+/H+ antiporter, TMEM165/GDT1 family, at 92,608 to 93,225 _03986 H281DRAFT_03987: H281DRAFT_03987 - protein of unknown function (DUF4136), at 93,306 to 94,016 _03987 H281DRAFT_03988: H281DRAFT_03988 - alanyl aminopeptidase. Metallo peptidase. MEROPS family M01, at 94,204 to 96,978 _03988 H281DRAFT_03989: H281DRAFT_03989 - proteic killer suppression protein, at 97,180 to 97,461 _03989 H281DRAFT_03990: H281DRAFT_03990 - addiction module antidote protein, HigA family, at 97,436 to 97,933 _03990 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.425 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.478 kb on + strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.479 kb on - strand, within H281DRAFT_03987at 93.536 kb on - strand, within H281DRAFT_03987at 93.653 kb on - strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.694 kb on + strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.695 kb on - strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.697 kb on + strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.698 kb on - strand, within H281DRAFT_03987at 93.739 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.757 kb on + strand, within H281DRAFT_03987at 93.826 kb on + strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.827 kb on - strand, within H281DRAFT_03987at 93.937 kb on + strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 93.938 kb on - strand, within H281DRAFT_03987at 94.055 kb on + strandat 94.055 kb on + strandat 94.056 kb on - strandat 94.056 kb on - strandat 94.061 kb on - strandat 94.064 kb on + strandat 94.064 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.110 kb on + strandat 94.111 kb on - strandat 94.200 kb on + strandat 94.201 kb on - strandat 94.201 kb on - strandat 94.316 kb on - strandat 94.446 kb on - strandat 94.610 kb on + strand, within H281DRAFT_03988at 94.612 kb on + strand, within H281DRAFT_03988at 94.612 kb on + strand, within H281DRAFT_03988at 94.613 kb on - strand, within H281DRAFT_03988at 94.672 kb on + strand, within H281DRAFT_03988at 94.672 kb on + strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.673 kb on - strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.705 kb on + strand, within H281DRAFT_03988at 94.837 kb on + strand, within H281DRAFT_03988at 94.838 kb on - strand, within H281DRAFT_03988at 94.922 kb on + strand, within H281DRAFT_03988at 95.107 kb on + strand, within H281DRAFT_03988at 95.107 kb on + strand, within H281DRAFT_03988at 95.108 kb on - strand, within H281DRAFT_03988at 95.255 kb on + strand, within H281DRAFT_03988at 95.255 kb on + strand, within H281DRAFT_03988at 95.419 kb on + strand, within H281DRAFT_03988at 95.419 kb on + strand, within H281DRAFT_03988at 95.420 kb on - strand, within H281DRAFT_03988at 95.420 kb on - strand, within H281DRAFT_03988at 95.433 kb on + strand, within H281DRAFT_03988at 95.441 kb on - strand, within H281DRAFT_03988at 95.485 kb on + strand, within H281DRAFT_03988at 95.485 kb on + strand, within H281DRAFT_03988at 95.486 kb on - strand, within H281DRAFT_03988at 95.486 kb on - strand, within H281DRAFT_03988at 95.674 kb on + strand, within H281DRAFT_03988at 95.695 kb on + strand, within H281DRAFT_03988at 95.695 kb on + strand, within H281DRAFT_03988at 95.895 kb on + strandat 95.895 kb on + strand, within H281DRAFT_03988at 95.895 kb on + strand, within H281DRAFT_03988at 95.896 kb on - strand, within H281DRAFT_03988at 95.896 kb on - strand, within H281DRAFT_03988at 96.143 kb on + strand, within H281DRAFT_03988at 96.143 kb on + strand, within H281DRAFT_03988at 96.208 kb on + strand, within H281DRAFT_03988at 96.209 kb on - strand, within H281DRAFT_03988at 96.209 kb on - strand, within H281DRAFT_03988at 96.269 kb on + strand, within H281DRAFT_03988at 96.270 kb on - strand, within H281DRAFT_03988at 96.400 kb on + strand, within H281DRAFT_03988at 96.662 kb on + strand, within H281DRAFT_03988at 96.781 kb on + strandat 97.128 kb on + strandat 97.240 kb on - strand, within H281DRAFT_03989at 97.240 kb on - strand, within H281DRAFT_03989at 97.463 kb on + strandat 97.464 kb on - strandat 97.709 kb on + strand, within H281DRAFT_03990at 97.754 kb on + strand, within H281DRAFT_03990at 97.754 kb on + strand, within H281DRAFT_03990

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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93,425 + H281DRAFT_03987 0.17 -1.7
93,478 + H281DRAFT_03987 0.24 +0.6
93,478 + H281DRAFT_03987 0.24 +0.5
93,479 - H281DRAFT_03987 0.24 +0.5
93,479 - H281DRAFT_03987 0.24 -0.1
93,479 - H281DRAFT_03987 0.24 +0.7
93,479 - H281DRAFT_03987 0.24 -2.1
93,536 - H281DRAFT_03987 0.32 -1.1
93,653 - H281DRAFT_03987 0.49 -1.1
93,694 + H281DRAFT_03987 0.55 -0.8
93,694 + H281DRAFT_03987 0.55 -0.7
93,694 + H281DRAFT_03987 0.55 -0.1
93,695 - H281DRAFT_03987 0.55 +0.2
93,695 - H281DRAFT_03987 0.55 -1.1
93,695 - H281DRAFT_03987 0.55 +0.5
93,697 + H281DRAFT_03987 0.55 +0.4
93,697 + H281DRAFT_03987 0.55 -0.6
93,698 - H281DRAFT_03987 0.55 +0.9
93,698 - H281DRAFT_03987 0.55 -0.4
93,739 + H281DRAFT_03987 0.61 +0.3
93,757 + H281DRAFT_03987 0.63 -1.4
93,757 + H281DRAFT_03987 0.63 -0.0
93,826 + H281DRAFT_03987 0.73 +0.2
93,827 - H281DRAFT_03987 0.73 -0.1
93,827 - H281DRAFT_03987 0.73 +0.0
93,827 - H281DRAFT_03987 0.73 +0.3
93,937 + H281DRAFT_03987 0.89 -0.3
93,938 - H281DRAFT_03987 0.89 +0.3
93,938 - H281DRAFT_03987 0.89 +0.5
93,938 - H281DRAFT_03987 0.89 +0.1
93,938 - H281DRAFT_03987 0.89 +0.1
93,938 - H281DRAFT_03987 0.89 +1.1
94,055 + +0.8
94,055 + +0.7
94,056 - -0.1
94,056 - -0.9
94,061 - +1.6
94,064 + -0.0
94,064 + +0.9
94,110 + -0.8
94,110 + -0.2
94,110 + -0.0
94,111 - +0.7
94,200 + +0.9
94,201 - +0.2
94,201 - -0.8
94,316 - +1.2
94,446 - +1.8
94,610 + H281DRAFT_03988 0.15 +0.4
94,612 + H281DRAFT_03988 0.15 +0.8
94,612 + H281DRAFT_03988 0.15 +1.4
94,613 - H281DRAFT_03988 0.15 +0.7
94,672 + H281DRAFT_03988 0.17 +0.2
94,672 + H281DRAFT_03988 0.17 +0.4
94,673 - H281DRAFT_03988 0.17 +0.2
94,673 - H281DRAFT_03988 0.17 +0.4
94,673 - H281DRAFT_03988 0.17 +0.4
94,673 - H281DRAFT_03988 0.17 +1.4
94,705 + H281DRAFT_03988 0.18 -0.7
94,705 + H281DRAFT_03988 0.18 +3.5
94,705 + H281DRAFT_03988 0.18 +0.6
94,705 + H281DRAFT_03988 0.18 +0.1
94,837 + H281DRAFT_03988 0.23 +0.5
94,838 - H281DRAFT_03988 0.23 +1.1
94,922 + H281DRAFT_03988 0.26 +0.5
95,107 + H281DRAFT_03988 0.33 +0.2
95,107 + H281DRAFT_03988 0.33 -0.4
95,108 - H281DRAFT_03988 0.33 +0.1
95,255 + H281DRAFT_03988 0.38 +0.9
95,255 + H281DRAFT_03988 0.38 -0.6
95,419 + H281DRAFT_03988 0.44 +1.2
95,419 + H281DRAFT_03988 0.44 +2.0
95,420 - H281DRAFT_03988 0.44 +0.0
95,420 - H281DRAFT_03988 0.44 +0.4
95,433 + H281DRAFT_03988 0.44 +0.7
95,441 - H281DRAFT_03988 0.45 +0.6
95,485 + H281DRAFT_03988 0.46 +0.1
95,485 + H281DRAFT_03988 0.46 -0.2
95,486 - H281DRAFT_03988 0.46 +1.8
95,486 - H281DRAFT_03988 0.46 +0.2
95,674 + H281DRAFT_03988 0.53 +0.1
95,695 + H281DRAFT_03988 0.54 -0.6
95,695 + H281DRAFT_03988 0.54 -1.2
95,895 + -0.7
95,895 + H281DRAFT_03988 0.61 -0.9
95,895 + H281DRAFT_03988 0.61 -0.0
95,896 - H281DRAFT_03988 0.61 +1.9
95,896 - H281DRAFT_03988 0.61 +1.0
96,143 + H281DRAFT_03988 0.70 +0.7
96,143 + H281DRAFT_03988 0.70 +0.3
96,208 + H281DRAFT_03988 0.72 +3.2
96,209 - H281DRAFT_03988 0.72 +1.0
96,209 - H281DRAFT_03988 0.72 +0.4
96,269 + H281DRAFT_03988 0.74 -0.6
96,270 - H281DRAFT_03988 0.74 +0.2
96,400 + H281DRAFT_03988 0.79 +0.4
96,662 + H281DRAFT_03988 0.89 +0.3
96,781 + +1.3
97,128 + +0.3
97,240 - H281DRAFT_03989 0.21 +0.7
97,240 - H281DRAFT_03989 0.21 -1.7
97,463 + -0.3
97,464 - +0.0
97,709 + H281DRAFT_03990 0.55 -0.9
97,754 + H281DRAFT_03990 0.64 -0.2
97,754 + H281DRAFT_03990 0.64 +0.1

Or see this region's nucleotide sequence