Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03954 and H281DRAFT_03955 are separated by 128 nucleotides H281DRAFT_03955 and H281DRAFT_03956 are separated by 169 nucleotides H281DRAFT_03956 and H281DRAFT_03957 are separated by 22 nucleotides
H281DRAFT_03954: H281DRAFT_03954 - Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains GATase1-like domain, at 55,706 to 57,187
_03954
H281DRAFT_03955: H281DRAFT_03955 - transporter, CPA2 family, at 57,316 to 59,073
_03955
H281DRAFT_03956: H281DRAFT_03956 - Protein of unknown function (DUF2848), at 59,243 to 59,929
_03956
H281DRAFT_03957: H281DRAFT_03957 - D-galactonate transporter, at 59,952 to 61,301
_03957
Position (kb) 57
58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 56.397 kb on + strand, within H281DRAFT_03954 at 56.398 kb on - strand, within H281DRAFT_03954 at 57.225 kb on + strand at 57.226 kb on - strand at 57.312 kb on + strand at 57.318 kb on - strand at 57.318 kb on - strand at 57.549 kb on + strand, within H281DRAFT_03955 at 57.725 kb on + strand, within H281DRAFT_03955 at 57.725 kb on + strand, within H281DRAFT_03955 at 57.725 kb on + strand, within H281DRAFT_03955 at 57.726 kb on - strand, within H281DRAFT_03955 at 57.726 kb on - strand, within H281DRAFT_03955 at 57.726 kb on - strand, within H281DRAFT_03955 at 57.866 kb on + strand, within H281DRAFT_03955 at 57.866 kb on + strand, within H281DRAFT_03955 at 57.866 kb on + strand, within H281DRAFT_03955 at 57.866 kb on + strand, within H281DRAFT_03955 at 57.866 kb on + strand, within H281DRAFT_03955 at 57.867 kb on - strand, within H281DRAFT_03955 at 57.867 kb on - strand, within H281DRAFT_03955 at 57.867 kb on - strand, within H281DRAFT_03955 at 58.190 kb on + strand, within H281DRAFT_03955 at 58.190 kb on + strand, within H281DRAFT_03955 at 58.191 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.350 kb on - strand, within H281DRAFT_03955 at 58.364 kb on - strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.439 kb on + strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.440 kb on - strand, within H281DRAFT_03955 at 58.757 kb on + strand, within H281DRAFT_03955 at 58.763 kb on - strand, within H281DRAFT_03955 at 58.817 kb on - strand, within H281DRAFT_03955 at 58.937 kb on + strand at 58.938 kb on - strand at 58.967 kb on + strand at 58.967 kb on + strand at 58.968 kb on - strand at 59.096 kb on - strand at 59.118 kb on - strand at 59.269 kb on - strand at 59.307 kb on + strand at 59.308 kb on - strand at 59.420 kb on + strand, within H281DRAFT_03956 at 59.421 kb on - strand, within H281DRAFT_03956 at 59.679 kb on - strand, within H281DRAFT_03956 at 59.913 kb on + strand at 59.914 kb on - strand at 59.933 kb on - strand at 60.061 kb on - strand at 60.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 56,397 + H281DRAFT_03954 0.47 -1.3 56,398 - H281DRAFT_03954 0.47 -0.4 57,225 + -0.5 57,226 - +0.2 57,312 + +0.0 57,318 - -0.3 57,318 - -0.2 57,549 + H281DRAFT_03955 0.13 +1.7 57,725 + H281DRAFT_03955 0.23 +1.6 57,725 + H281DRAFT_03955 0.23 -0.1 57,725 + H281DRAFT_03955 0.23 -1.4 57,726 - H281DRAFT_03955 0.23 +1.6 57,726 - H281DRAFT_03955 0.23 +0.0 57,726 - H281DRAFT_03955 0.23 -0.2 57,866 + H281DRAFT_03955 0.31 -0.4 57,866 + H281DRAFT_03955 0.31 +1.0 57,866 + H281DRAFT_03955 0.31 -0.7 57,866 + H281DRAFT_03955 0.31 -1.1 57,866 + H281DRAFT_03955 0.31 -0.3 57,867 - H281DRAFT_03955 0.31 -0.3 57,867 - H281DRAFT_03955 0.31 +0.0 57,867 - H281DRAFT_03955 0.31 +0.7 58,190 + H281DRAFT_03955 0.50 -1.0 58,190 + H281DRAFT_03955 0.50 -1.1 58,191 - H281DRAFT_03955 0.50 -0.0 58,350 - H281DRAFT_03955 0.59 -0.7 58,350 - H281DRAFT_03955 0.59 -1.0 58,350 - H281DRAFT_03955 0.59 +0.3 58,350 - H281DRAFT_03955 0.59 +0.3 58,364 - H281DRAFT_03955 0.60 -2.1 58,439 + H281DRAFT_03955 0.64 -0.2 58,439 + H281DRAFT_03955 0.64 -1.2 58,439 + H281DRAFT_03955 0.64 +0.3 58,440 - H281DRAFT_03955 0.64 +0.4 58,440 - H281DRAFT_03955 0.64 -0.2 58,440 - H281DRAFT_03955 0.64 -1.2 58,440 - H281DRAFT_03955 0.64 +0.2 58,757 + H281DRAFT_03955 0.82 +0.4 58,763 - H281DRAFT_03955 0.82 -1.3 58,817 - H281DRAFT_03955 0.85 -0.4 58,937 + +0.6 58,938 - +0.2 58,967 + +0.0 58,967 + -2.6 58,968 - -0.0 59,096 - +0.2 59,118 - +0.9 59,269 - +0.9 59,307 + +0.8 59,308 - +0.8 59,420 + H281DRAFT_03956 0.26 -0.3 59,421 - H281DRAFT_03956 0.26 -0.8 59,679 - H281DRAFT_03956 0.63 +0.6 59,913 + +0.0 59,914 - -2.0 59,933 - +0.0 60,061 - +0.8 60,061 - +0.5
Or see this region's nucleotide sequence