Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03565 and H281DRAFT_03566 are separated by 244 nucleotides H281DRAFT_03566 and H281DRAFT_03567 are separated by 160 nucleotides H281DRAFT_03567 and H281DRAFT_03568 are separated by 26 nucleotides
H281DRAFT_03565: H281DRAFT_03565 - Sugar phosphate permease, at 72,821 to 74,107
_03565
H281DRAFT_03566: H281DRAFT_03566 - alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase, at 74,352 to 75,572
_03566
H281DRAFT_03567: H281DRAFT_03567 - transcriptional regulator, GntR family, at 75,733 to 76,458
_03567
H281DRAFT_03568: H281DRAFT_03568 - hypothetical protein, at 76,485 to 76,637
_03568
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 73.365 kb on + strand, within H281DRAFT_03565 at 73.365 kb on + strand, within H281DRAFT_03565 at 73.366 kb on - strand, within H281DRAFT_03565 at 73.408 kb on - strand, within H281DRAFT_03565 at 73.416 kb on + strand, within H281DRAFT_03565 at 73.416 kb on + strand, within H281DRAFT_03565 at 73.426 kb on + strand, within H281DRAFT_03565 at 73.496 kb on + strand, within H281DRAFT_03565 at 73.520 kb on - strand at 73.599 kb on + strand, within H281DRAFT_03565 at 73.600 kb on - strand, within H281DRAFT_03565 at 73.873 kb on + strand, within H281DRAFT_03565 at 73.874 kb on - strand at 73.897 kb on + strand, within H281DRAFT_03565 at 73.929 kb on + strand, within H281DRAFT_03565 at 73.929 kb on + strand, within H281DRAFT_03565 at 73.930 kb on - strand, within H281DRAFT_03565 at 73.930 kb on - strand, within H281DRAFT_03565 at 74.012 kb on - strand at 74.034 kb on + strand at 74.034 kb on + strand at 74.034 kb on + strand at 74.046 kb on + strand at 74.047 kb on - strand at 74.066 kb on + strand at 74.066 kb on + strand at 74.067 kb on - strand at 74.074 kb on + strand at 74.174 kb on + strand at 74.581 kb on + strand, within H281DRAFT_03566 at 74.582 kb on - strand, within H281DRAFT_03566 at 74.648 kb on + strand, within H281DRAFT_03566 at 74.649 kb on - strand, within H281DRAFT_03566 at 74.650 kb on + strand, within H281DRAFT_03566 at 74.651 kb on - strand, within H281DRAFT_03566 at 74.652 kb on + strand, within H281DRAFT_03566 at 74.652 kb on + strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566 at 74.653 kb on - strand, within H281DRAFT_03566 at 75.413 kb on + strand, within H281DRAFT_03566 at 75.414 kb on - strand, within H281DRAFT_03566 at 75.414 kb on - strand, within H281DRAFT_03566 at 75.561 kb on + strand at 75.851 kb on + strand, within H281DRAFT_03567 at 75.851 kb on + strand, within H281DRAFT_03567 at 75.851 kb on + strand, within H281DRAFT_03567 at 75.852 kb on - strand, within H281DRAFT_03567 at 75.852 kb on - strand, within H281DRAFT_03567 at 76.118 kb on - strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.231 kb on + strand, within H281DRAFT_03567 at 76.233 kb on + strand, within H281DRAFT_03567 at 76.234 kb on - strand, within H281DRAFT_03567
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 73,365 + H281DRAFT_03565 0.42 -0.2 73,365 + H281DRAFT_03565 0.42 +1.5 73,366 - H281DRAFT_03565 0.42 +1.0 73,408 - H281DRAFT_03565 0.46 -0.8 73,416 + H281DRAFT_03565 0.46 -0.1 73,416 + H281DRAFT_03565 0.46 -0.4 73,426 + H281DRAFT_03565 0.47 +0.6 73,496 + H281DRAFT_03565 0.52 +0.5 73,520 - +0.7 73,599 + H281DRAFT_03565 0.60 -0.2 73,600 - H281DRAFT_03565 0.61 +0.7 73,873 + H281DRAFT_03565 0.82 -1.8 73,874 - +2.9 73,897 + H281DRAFT_03565 0.84 -1.1 73,929 + H281DRAFT_03565 0.86 -1.4 73,929 + H281DRAFT_03565 0.86 -0.1 73,930 - H281DRAFT_03565 0.86 -0.1 73,930 - H281DRAFT_03565 0.86 +0.1 74,012 - +1.0 74,034 + +0.8 74,034 + +0.2 74,034 + +0.6 74,046 + +2.6 74,047 - -0.3 74,066 + +0.0 74,066 + +0.3 74,067 - -0.0 74,074 + -0.4 74,174 + +0.4 74,581 + H281DRAFT_03566 0.19 +0.3 74,582 - H281DRAFT_03566 0.19 +1.5 74,648 + H281DRAFT_03566 0.24 +1.3 74,649 - H281DRAFT_03566 0.24 -0.8 74,650 + H281DRAFT_03566 0.24 -0.1 74,651 - H281DRAFT_03566 0.24 -1.0 74,652 + H281DRAFT_03566 0.25 -0.4 74,652 + H281DRAFT_03566 0.25 +0.5 74,653 - H281DRAFT_03566 0.25 +0.7 74,653 - H281DRAFT_03566 0.25 -0.4 74,653 - H281DRAFT_03566 0.25 +0.2 75,413 + H281DRAFT_03566 0.87 -0.9 75,414 - H281DRAFT_03566 0.87 -0.9 75,414 - H281DRAFT_03566 0.87 -0.2 75,561 + -1.4 75,851 + H281DRAFT_03567 0.16 +0.7 75,851 + H281DRAFT_03567 0.16 +0.7 75,851 + H281DRAFT_03567 0.16 -0.3 75,852 - H281DRAFT_03567 0.16 +0.2 75,852 - H281DRAFT_03567 0.16 +0.3 76,118 - H281DRAFT_03567 0.53 +0.2 76,231 + H281DRAFT_03567 0.69 -0.4 76,231 + H281DRAFT_03567 0.69 -0.9 76,231 + H281DRAFT_03567 0.69 -0.1 76,231 + H281DRAFT_03567 0.69 -0.8 76,231 + H281DRAFT_03567 0.69 -0.7 76,231 + H281DRAFT_03567 0.69 +0.6 76,233 + H281DRAFT_03567 0.69 +0.9 76,234 - H281DRAFT_03567 0.69 -0.8
Or see this region's nucleotide sequence