Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03481 and H281DRAFT_03482 are separated by 200 nucleotides H281DRAFT_03482 and H281DRAFT_03483 are separated by 186 nucleotides
H281DRAFT_03481: H281DRAFT_03481 - PAP2 superfamily protein, at 565,009 to 565,344
_03481
H281DRAFT_03482: H281DRAFT_03482 - hypothetical protein, at 565,545 to 567,110
_03482
H281DRAFT_03483: H281DRAFT_03483 - Major Facilitator Superfamily protein, at 567,297 to 568,649
_03483
Position (kb) 565
566
567
568 Strain fitness (log2 ratio) -1
0
1 at 564.746 kb on - strand at 565.040 kb on - strand at 565.467 kb on - strand at 565.674 kb on + strand at 565.675 kb on - strand at 566.113 kb on + strand, within H281DRAFT_03482 at 566.280 kb on - strand, within H281DRAFT_03482 at 566.281 kb on + strand, within H281DRAFT_03482 at 566.282 kb on - strand, within H281DRAFT_03482 at 566.447 kb on - strand, within H281DRAFT_03482 at 566.727 kb on + strand, within H281DRAFT_03482 at 567.091 kb on - strand at 567.230 kb on + strand at 567.276 kb on + strand at 567.554 kb on + strand, within H281DRAFT_03483 at 567.622 kb on - strand at 567.888 kb on + strand, within H281DRAFT_03483 at 568.054 kb on - strand, within H281DRAFT_03483 at 568.054 kb on - strand, within H281DRAFT_03483
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 564,746 - +0.5 565,040 - +1.0 565,467 - -0.0 565,674 + +0.5 565,675 - +0.2 566,113 + H281DRAFT_03482 0.36 +0.3 566,280 - H281DRAFT_03482 0.47 -0.1 566,281 + H281DRAFT_03482 0.47 +0.6 566,282 - H281DRAFT_03482 0.47 -0.1 566,447 - H281DRAFT_03482 0.58 +0.5 566,727 + H281DRAFT_03482 0.75 +1.3 567,091 - -0.9 567,230 + +0.8 567,276 + -0.2 567,554 + H281DRAFT_03483 0.19 +1.0 567,622 - -0.9 567,888 + H281DRAFT_03483 0.44 -1.2 568,054 - H281DRAFT_03483 0.56 -0.1 568,054 - H281DRAFT_03483 0.56 +0.1
Or see this region's nucleotide sequence