Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03371 and H281DRAFT_03372 are separated by 18 nucleotides H281DRAFT_03372 and H281DRAFT_03373 are separated by 87 nucleotides H281DRAFT_03373 and H281DRAFT_03374 are separated by 794 nucleotides
H281DRAFT_03371: H281DRAFT_03371 - outer membrane protein, multidrug efflux system, at 433,501 to 434,988
_03371
H281DRAFT_03372: H281DRAFT_03372 - hypothetical protein, at 435,007 to 435,615
_03372
H281DRAFT_03373: H281DRAFT_03373 - Low temperature requirement protein LtrA, at 435,703 to 436,815
_03373
H281DRAFT_03374: H281DRAFT_03374 - hypothetical protein, at 437,610 to 439,712
_03374
Position (kb) 435
436
437 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 435.442 kb on - strand, within H281DRAFT_03372 at 435.496 kb on - strand, within H281DRAFT_03372 at 436.307 kb on - strand, within H281DRAFT_03373 at 436.329 kb on - strand, within H281DRAFT_03373 at 436.448 kb on + strand, within H281DRAFT_03373 at 436.466 kb on + strand, within H281DRAFT_03373 at 436.482 kb on - strand, within H281DRAFT_03373 at 436.613 kb on + strand, within H281DRAFT_03373 at 436.716 kb on + strand at 436.779 kb on + strand at 436.970 kb on + strand at 436.977 kb on + strand at 437.224 kb on + strand at 437.225 kb on - strand at 437.389 kb on + strand at 437.589 kb on + strand at 437.637 kb on + strand at 437.638 kb on - strand at 437.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 435,442 - H281DRAFT_03372 0.71 -0.7 435,496 - H281DRAFT_03372 0.80 +0.2 436,307 - H281DRAFT_03373 0.54 +1.0 436,329 - H281DRAFT_03373 0.56 -0.4 436,448 + H281DRAFT_03373 0.67 +0.1 436,466 + H281DRAFT_03373 0.69 +0.5 436,482 - H281DRAFT_03373 0.70 -0.1 436,613 + H281DRAFT_03373 0.82 +0.4 436,716 + +0.3 436,779 + -0.4 436,970 + -3.9 436,977 + +0.2 437,224 + +0.9 437,225 - +0.8 437,389 + +0.3 437,589 + -0.4 437,637 + -2.0 437,638 - -0.1 437,666 - -1.1
Or see this region's nucleotide sequence