Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03230 and H281DRAFT_03231 are separated by 156 nucleotides H281DRAFT_03231 and H281DRAFT_03232 are separated by 10 nucleotides
H281DRAFT_03230: H281DRAFT_03230 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 282,737 to 283,990
_03230
H281DRAFT_03231: H281DRAFT_03231 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 284,147 to 285,112
_03231
H281DRAFT_03232: H281DRAFT_03232 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 285,123 to 285,974
_03232
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.163 kb on + strand at 283.163 kb on + strand, within H281DRAFT_03230 at 283.425 kb on - strand, within H281DRAFT_03230 at 283.427 kb on - strand, within H281DRAFT_03230 at 283.593 kb on - strand, within H281DRAFT_03230 at 283.771 kb on + strand, within H281DRAFT_03230 at 283.771 kb on + strand, within H281DRAFT_03230 at 283.980 kb on - strand at 283.988 kb on + strand at 284.057 kb on + strand at 284.107 kb on - strand at 284.331 kb on - strand, within H281DRAFT_03231 at 284.421 kb on - strand, within H281DRAFT_03231 at 284.437 kb on + strand, within H281DRAFT_03231 at 284.451 kb on - strand, within H281DRAFT_03231 at 284.529 kb on - strand, within H281DRAFT_03231 at 284.682 kb on + strand, within H281DRAFT_03231 at 284.748 kb on - strand, within H281DRAFT_03231 at 284.748 kb on - strand, within H281DRAFT_03231 at 284.982 kb on - strand, within H281DRAFT_03231 at 284.984 kb on + strand, within H281DRAFT_03231 at 284.984 kb on + strand, within H281DRAFT_03231 at 284.991 kb on - strand, within H281DRAFT_03231 at 284.991 kb on - strand, within H281DRAFT_03231 at 285.241 kb on + strand, within H281DRAFT_03232 at 285.242 kb on - strand, within H281DRAFT_03232 at 285.269 kb on + strand, within H281DRAFT_03232 at 285.273 kb on + strand, within H281DRAFT_03232 at 285.312 kb on + strand, within H281DRAFT_03232 at 285.313 kb on - strand, within H281DRAFT_03232 at 285.349 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.771 kb on + strand, within H281DRAFT_03232 at 286.015 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 283,163 + +1.2 283,163 + H281DRAFT_03230 0.34 +1.0 283,425 - H281DRAFT_03230 0.55 +0.1 283,427 - H281DRAFT_03230 0.55 -0.0 283,593 - H281DRAFT_03230 0.68 +0.4 283,771 + H281DRAFT_03230 0.82 -0.4 283,771 + H281DRAFT_03230 0.82 +0.2 283,980 - +0.8 283,988 + -0.7 284,057 + -1.7 284,107 - -0.3 284,331 - H281DRAFT_03231 0.19 -0.6 284,421 - H281DRAFT_03231 0.28 -0.7 284,437 + H281DRAFT_03231 0.30 +1.4 284,451 - H281DRAFT_03231 0.31 +0.1 284,529 - H281DRAFT_03231 0.40 +1.8 284,682 + H281DRAFT_03231 0.55 -0.7 284,748 - H281DRAFT_03231 0.62 -0.8 284,748 - H281DRAFT_03231 0.62 +1.0 284,982 - H281DRAFT_03231 0.86 -0.4 284,984 + H281DRAFT_03231 0.87 +0.1 284,984 + H281DRAFT_03231 0.87 +0.6 284,991 - H281DRAFT_03231 0.87 -0.4 284,991 - H281DRAFT_03231 0.87 -0.2 285,241 + H281DRAFT_03232 0.14 +3.4 285,242 - H281DRAFT_03232 0.14 -1.7 285,269 + H281DRAFT_03232 0.17 -1.2 285,273 + H281DRAFT_03232 0.18 +0.4 285,312 + H281DRAFT_03232 0.22 +0.3 285,313 - H281DRAFT_03232 0.22 +0.1 285,349 - H281DRAFT_03232 0.27 -0.0 285,503 - H281DRAFT_03232 0.45 +0.8 285,503 - H281DRAFT_03232 0.45 +2.9 285,503 - H281DRAFT_03232 0.45 +0.8 285,771 + H281DRAFT_03232 0.76 -1.8 286,015 + -0.5
Or see this region's nucleotide sequence