Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02789 and H281DRAFT_02790 are separated by 10 nucleotides H281DRAFT_02790 and H281DRAFT_02791 are separated by 204 nucleotides H281DRAFT_02791 and H281DRAFT_02794 are separated by 317 nucleotides
H281DRAFT_02789: H281DRAFT_02789 - hypothetical protein, at 378,997 to 379,515
_02789
H281DRAFT_02790: H281DRAFT_02790 - hypothetical protein, at 379,526 to 380,227
_02790
H281DRAFT_02791: H281DRAFT_02791 - apolipoprotein D and lipocalin family protein, at 380,432 to 381,004
_02791
H281DRAFT_02794: H281DRAFT_02794 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 381,322 to 382,533
_02794
Position (kb) 380
381
382 Strain fitness (log2 ratio) -1
0
1
2 at 379.556 kb on + strand at 380.315 kb on - strand at 380.315 kb on - strand at 380.320 kb on - strand at 380.471 kb on - strand at 380.585 kb on + strand, within H281DRAFT_02791 at 380.660 kb on + strand, within H281DRAFT_02791 at 380.999 kb on - strand at 380.999 kb on - strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.206 kb on + strand at 381.244 kb on + strand at 381.306 kb on + strand at 381.307 kb on - strand at 381.307 kb on - strand at 381.424 kb on + strand at 381.492 kb on + strand, within H281DRAFT_02794 at 381.740 kb on - strand, within H281DRAFT_02794 at 381.740 kb on - strand, within H281DRAFT_02794
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 379,556 + +0.5 380,315 - -0.2 380,315 - +0.9 380,320 - +0.2 380,471 - -0.6 380,585 + H281DRAFT_02791 0.27 +0.3 380,660 + H281DRAFT_02791 0.40 -0.9 380,999 - +0.7 380,999 - -0.3 381,206 + +2.3 381,206 + -0.6 381,206 + -1.0 381,206 + +1.4 381,206 + +0.4 381,244 + +1.7 381,306 + -0.3 381,307 - +0.4 381,307 - +1.1 381,424 + +0.7 381,492 + H281DRAFT_02794 0.14 +1.7 381,740 - H281DRAFT_02794 0.34 -0.4 381,740 - H281DRAFT_02794 0.34 -0.5
Or see this region's nucleotide sequence