Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02499 and H281DRAFT_02500 are separated by 141 nucleotides H281DRAFT_02500 and H281DRAFT_02501 are separated by 253 nucleotides H281DRAFT_02501 and H281DRAFT_02502 are separated by 244 nucleotides
H281DRAFT_02499: H281DRAFT_02499 - Acyl-CoA reductase, at 76,194 to 77,705
_02499
H281DRAFT_02500: H281DRAFT_02500 - hypothetical protein, at 77,847 to 78,083
_02500
H281DRAFT_02501: H281DRAFT_02501 - hypothetical protein, at 78,337 to 79,449
_02501
H281DRAFT_02502: H281DRAFT_02502 - transcriptional regulator, LysR family, at 79,694 to 80,626
_02502
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 77.429 kb on + strand, within H281DRAFT_02499 at 77.429 kb on + strand, within H281DRAFT_02499 at 77.430 kb on - strand, within H281DRAFT_02499 at 77.704 kb on - strand at 77.848 kb on + strand at 78.057 kb on + strand, within H281DRAFT_02500 at 78.100 kb on - strand at 78.159 kb on + strand at 78.287 kb on + strand at 78.288 kb on - strand at 78.459 kb on + strand, within H281DRAFT_02501 at 78.530 kb on - strand, within H281DRAFT_02501 at 78.585 kb on + strand, within H281DRAFT_02501 at 78.614 kb on - strand, within H281DRAFT_02501 at 78.864 kb on + strand, within H281DRAFT_02501 at 78.922 kb on + strand, within H281DRAFT_02501 at 79.247 kb on - strand, within H281DRAFT_02501 at 79.336 kb on - strand, within H281DRAFT_02501 at 79.379 kb on - strand at 79.447 kb on + strand at 79.447 kb on + strand at 79.448 kb on - strand at 79.448 kb on - strand at 79.650 kb on - strand at 79.722 kb on - strand at 79.890 kb on - strand, within H281DRAFT_02502 at 80.204 kb on + strand, within H281DRAFT_02502 at 80.205 kb on - strand, within H281DRAFT_02502 at 80.245 kb on - strand, within H281DRAFT_02502
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 77,429 + H281DRAFT_02499 0.82 +0.3 77,429 + H281DRAFT_02499 0.82 +1.0 77,430 - H281DRAFT_02499 0.82 +0.5 77,704 - +0.1 77,848 + -0.1 78,057 + H281DRAFT_02500 0.89 -0.5 78,100 - -0.8 78,159 + +0.3 78,287 + +0.4 78,288 - +1.0 78,459 + H281DRAFT_02501 0.11 -0.2 78,530 - H281DRAFT_02501 0.17 -2.4 78,585 + H281DRAFT_02501 0.22 -0.4 78,614 - H281DRAFT_02501 0.25 +0.6 78,864 + H281DRAFT_02501 0.47 +0.9 78,922 + H281DRAFT_02501 0.53 +1.0 79,247 - H281DRAFT_02501 0.82 +0.3 79,336 - H281DRAFT_02501 0.90 +0.9 79,379 - -0.1 79,447 + +0.3 79,447 + -2.2 79,448 - -1.1 79,448 - -0.1 79,650 - -0.3 79,722 - +0.5 79,890 - H281DRAFT_02502 0.21 +0.2 80,204 + H281DRAFT_02502 0.55 -0.4 80,205 - H281DRAFT_02502 0.55 +0.4 80,245 - H281DRAFT_02502 0.59 -1.4
Or see this region's nucleotide sequence