Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02441 and H281DRAFT_02442 are separated by 646 nucleotides H281DRAFT_02442 and H281DRAFT_02443 are separated by 120 nucleotides H281DRAFT_02443 and H281DRAFT_02444 are separated by 6 nucleotides
H281DRAFT_02441: H281DRAFT_02441 - putative ABC transport system ATP-binding protein, at 3,972 to 4,721
_02441
H281DRAFT_02442: H281DRAFT_02442 - NADH dehydrogenase subunit M, at 5,368 to 6,921
_02442
H281DRAFT_02443: H281DRAFT_02443 - alkylhydroperoxidase AhpD family core domain-containing protein, at 7,042 to 7,434
_02443
H281DRAFT_02444: H281DRAFT_02444 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 7,441 to 8,130
_02444
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.799 kb on + strand at 4.799 kb on + strand at 4.800 kb on - strand at 4.914 kb on - strand at 5.150 kb on + strand at 5.151 kb on - strand at 5.208 kb on + strand at 5.246 kb on + strand at 5.292 kb on + strand at 5.293 kb on - strand at 5.296 kb on + strand at 5.297 kb on - strand at 5.297 kb on - strand at 5.344 kb on + strand at 5.385 kb on + strand at 5.386 kb on - strand at 5.394 kb on + strand at 5.395 kb on - strand at 5.461 kb on - strand at 5.812 kb on + strand, within H281DRAFT_02442 at 5.990 kb on + strand, within H281DRAFT_02442 at 6.051 kb on + strand, within H281DRAFT_02442 at 6.191 kb on + strand, within H281DRAFT_02442 at 6.195 kb on + strand, within H281DRAFT_02442 at 6.221 kb on - strand, within H281DRAFT_02442 at 6.289 kb on - strand, within H281DRAFT_02442 at 6.409 kb on + strand at 6.443 kb on - strand, within H281DRAFT_02442 at 6.910 kb on - strand at 6.979 kb on - strand at 7.067 kb on - strand at 7.252 kb on + strand, within H281DRAFT_02443 at 7.433 kb on - strand at 7.539 kb on + strand, within H281DRAFT_02444 at 7.539 kb on + strand, within H281DRAFT_02444 at 7.627 kb on - strand, within H281DRAFT_02444 at 7.838 kb on - strand, within H281DRAFT_02444
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,799 + +0.1 4,799 + -0.6 4,800 - +0.1 4,914 - +0.1 5,150 + -0.4 5,151 - -0.3 5,208 + +0.3 5,246 + +1.3 5,292 + -0.3 5,293 - +0.4 5,296 + -0.0 5,297 - +0.1 5,297 - -0.6 5,344 + -1.1 5,385 + +0.9 5,386 - +0.4 5,394 + -1.0 5,395 - -0.4 5,461 - +0.5 5,812 + H281DRAFT_02442 0.29 +0.8 5,990 + H281DRAFT_02442 0.40 +0.1 6,051 + H281DRAFT_02442 0.44 -0.7 6,191 + H281DRAFT_02442 0.53 -0.9 6,195 + H281DRAFT_02442 0.53 -2.9 6,221 - H281DRAFT_02442 0.55 -1.3 6,289 - H281DRAFT_02442 0.59 -0.7 6,409 + +3.6 6,443 - H281DRAFT_02442 0.69 +0.4 6,910 - -0.0 6,979 - -0.4 7,067 - +0.3 7,252 + H281DRAFT_02443 0.53 -0.0 7,433 - -0.4 7,539 + H281DRAFT_02444 0.14 +0.9 7,539 + H281DRAFT_02444 0.14 +0.4 7,627 - H281DRAFT_02444 0.27 +0.7 7,838 - H281DRAFT_02444 0.58 -0.5
Or see this region's nucleotide sequence