Experiment: LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00848 and H281DRAFT_00849 overlap by 4 nucleotides H281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotides H281DRAFT_00850 and H281DRAFT_00851 are separated by 49 nucleotides
H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763
_00848
H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620
_00849
H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306
_00850
H281DRAFT_00851: H281DRAFT_00851 - polyhydroxyalkanoate synthase, at 940,356 to 942,116
_00851
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 938.440 kb on + strand, within H281DRAFT_00848 at 938.441 kb on - strand, within H281DRAFT_00848 at 938.644 kb on + strand at 938.644 kb on + strand at 938.645 kb on - strand at 938.645 kb on - strand at 938.647 kb on + strand at 938.647 kb on + strand at 938.648 kb on - strand at 938.983 kb on + strand, within H281DRAFT_00849 at 938.984 kb on - strand, within H281DRAFT_00849 at 939.294 kb on + strand, within H281DRAFT_00849 at 939.295 kb on - strand, within H281DRAFT_00849 at 939.331 kb on + strand, within H281DRAFT_00849 at 939.537 kb on + strand at 939.537 kb on + strand at 939.543 kb on + strand at 939.544 kb on - strand at 939.662 kb on + strand at 939.663 kb on - strand at 939.663 kb on - strand at 939.663 kb on - strand at 939.727 kb on + strand at 939.728 kb on - strand at 939.735 kb on + strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.736 kb on - strand at 939.764 kb on + strand at 939.765 kb on - strand at 939.839 kb on + strand at 939.840 kb on - strand at 939.840 kb on - strand at 939.849 kb on + strand at 939.850 kb on - strand at 939.925 kb on + strand at 939.925 kb on + strand at 939.939 kb on + strand at 940.030 kb on + strand at 940.127 kb on + strand at 940.128 kb on - strand at 940.502 kb on + strand at 940.502 kb on + strand at 940.502 kb on + strand at 940.503 kb on - strand at 940.503 kb on - strand at 940.554 kb on + strand, within H281DRAFT_00851 at 940.555 kb on - strand, within H281DRAFT_00851
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 938,440 + H281DRAFT_00848 0.75 -0.9 938,441 - H281DRAFT_00848 0.75 -3.1 938,644 + -0.2 938,644 + -0.4 938,645 - -0.4 938,645 - +1.2 938,647 + -0.4 938,647 + -0.2 938,648 - -1.7 938,983 + H281DRAFT_00849 0.26 +0.2 938,984 - H281DRAFT_00849 0.26 -0.0 939,294 + H281DRAFT_00849 0.62 +0.2 939,295 - H281DRAFT_00849 0.62 -1.0 939,331 + H281DRAFT_00849 0.66 -1.2 939,537 + -1.1 939,537 + -1.6 939,543 + -0.5 939,544 - -1.3 939,662 + +1.0 939,663 - +0.1 939,663 - -1.1 939,663 - -0.1 939,727 + -0.0 939,728 - -0.5 939,735 + -0.8 939,736 - +1.3 939,736 - +1.4 939,736 - -0.7 939,736 - -0.9 939,764 + +0.5 939,765 - +0.4 939,839 + -0.1 939,840 - -1.6 939,840 - -0.4 939,849 + -1.3 939,850 - -0.8 939,925 + +0.6 939,925 + +1.7 939,939 + -1.4 940,030 + +0.7 940,127 + -0.5 940,128 - +0.4 940,502 + +0.4 940,502 + +0.6 940,502 + -0.9 940,503 - +0.6 940,503 - +0.5 940,554 + H281DRAFT_00851 0.11 +0.1 940,555 - H281DRAFT_00851 0.11 +0.3
Or see this region's nucleotide sequence