Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4212

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_4211 and Ga0059261_4212 are separated by 34 nucleotidesGa0059261_4212 and Ga0059261_4213 overlap by 28 nucleotides Ga0059261_4211: Ga0059261_4211 - Dehydrogenases (flavoproteins), at 4,364,697 to 4,366,358 _4211 Ga0059261_4212: Ga0059261_4212 - TPR repeat, at 4,366,393 to 4,367,955 _4212 Ga0059261_4213: Ga0059261_4213 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 4,367,928 to 4,368,779 _4213 Position (kb) 4366 4367 4368Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4366.356 kb on + strandat 4366.357 kb on + strandat 4366.429 kb on + strandat 4366.540 kb on + strandat 4366.764 kb on + strand, within Ga0059261_4212at 4366.809 kb on + strand, within Ga0059261_4212at 4366.819 kb on + strand, within Ga0059261_4212at 4366.819 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.821 kb on + strand, within Ga0059261_4212at 4366.962 kb on + strand, within Ga0059261_4212at 4366.962 kb on + strand, within Ga0059261_4212at 4367.218 kb on + strand, within Ga0059261_4212at 4367.269 kb on + strand, within Ga0059261_4212at 4367.269 kb on + strand, within Ga0059261_4212at 4367.392 kb on + strand, within Ga0059261_4212at 4367.599 kb on + strand, within Ga0059261_4212at 4367.599 kb on + strandat 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.608 kb on + strand, within Ga0059261_4212at 4367.719 kb on + strand, within Ga0059261_4212at 4367.736 kb on + strand, within Ga0059261_4212at 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.821 kb on + strandat 4367.854 kb on + strandat 4367.854 kb on + strandat 4367.878 kb on + strandat 4368.812 kb on + strandat 4368.812 kb on + strandat 4368.813 kb on - strandat 4368.815 kb on - strandat 4368.865 kb on - strandat 4368.865 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
4,366,356 + -0.2
4,366,357 + +0.3
4,366,429 + +0.4
4,366,540 + -0.6
4,366,764 + Ga0059261_4212 0.24 -1.6
4,366,809 + Ga0059261_4212 0.27 +0.1
4,366,819 + Ga0059261_4212 0.27 +0.0
4,366,819 + Ga0059261_4212 0.27 -0.4
4,366,821 + Ga0059261_4212 0.27 -0.1
4,366,821 + Ga0059261_4212 0.27 -0.4
4,366,821 + Ga0059261_4212 0.27 -1.5
4,366,821 + Ga0059261_4212 0.27 -1.4
4,366,821 + Ga0059261_4212 0.27 -0.4
4,366,821 + Ga0059261_4212 0.27 +0.2
4,366,821 + Ga0059261_4212 0.27 +0.0
4,366,821 + Ga0059261_4212 0.27 +0.6
4,366,821 + Ga0059261_4212 0.27 -0.2
4,366,962 + Ga0059261_4212 0.36 -0.2
4,366,962 + Ga0059261_4212 0.36 +0.4
4,367,218 + Ga0059261_4212 0.53 +0.9
4,367,269 + Ga0059261_4212 0.56 +0.3
4,367,269 + Ga0059261_4212 0.56 -0.2
4,367,392 + Ga0059261_4212 0.64 -1.1
4,367,599 + Ga0059261_4212 0.77 -0.5
4,367,599 + +2.8
4,367,608 + Ga0059261_4212 0.78 -2.0
4,367,608 + Ga0059261_4212 0.78 -0.4
4,367,608 + Ga0059261_4212 0.78 -1.1
4,367,608 + Ga0059261_4212 0.78 -0.1
4,367,719 + Ga0059261_4212 0.85 -1.5
4,367,736 + Ga0059261_4212 0.86 -0.4
4,367,821 + -0.3
4,367,821 + -0.7
4,367,821 + +0.3
4,367,854 + -0.9
4,367,854 + +0.0
4,367,878 + +0.1
4,368,812 + +0.2
4,368,812 + -0.8
4,368,813 - +0.2
4,368,815 - -0.2
4,368,865 - -0.2
4,368,865 - +0.4

Or see this region's nucleotide sequence