Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3176

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3174 and Ga0059261_3175 are separated by 116 nucleotidesGa0059261_3175 and Ga0059261_3176 are separated by 184 nucleotidesGa0059261_3176 and Ga0059261_3177 are separated by 63 nucleotidesGa0059261_3177 and Ga0059261_3178 are separated by 47 nucleotides Ga0059261_3174: Ga0059261_3174 - EF hand, at 3,309,412 to 3,309,927 _3174 Ga0059261_3175: Ga0059261_3175 - DNA repair protein radc, at 3,310,044 to 3,310,736 _3175 Ga0059261_3176: Ga0059261_3176 - Uncharacterized protein conserved in bacteria, at 3,310,921 to 3,311,238 _3176 Ga0059261_3177: Ga0059261_3177 - ATP synthase F0 subcomplex A subunit, at 3,311,302 to 3,312,060 _3177 Ga0059261_3178: Ga0059261_3178 - ATP synthase subunit C, at 3,312,108 to 3,312,335 _3178 Position (kb) 3310 3311 3312Strain fitness (log2 ratio) -1 0 1at 3309.925 kb on + strandat 3309.926 kb on - strandat 3310.011 kb on - strandat 3310.011 kb on - strandat 3310.045 kb on + strandat 3310.045 kb on + strandat 3310.046 kb on - strandat 3310.211 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.261 kb on + strand, within Ga0059261_3175at 3310.262 kb on - strand, within Ga0059261_3175at 3310.262 kb on - strand, within Ga0059261_3175at 3310.262 kb on - strand, within Ga0059261_3175at 3310.262 kb on - strand, within Ga0059261_3175at 3310.319 kb on + strand, within Ga0059261_3175at 3310.320 kb on - strand, within Ga0059261_3175at 3310.320 kb on - strand, within Ga0059261_3175at 3310.320 kb on - strand, within Ga0059261_3175at 3310.320 kb on - strand, within Ga0059261_3175at 3310.320 kb on - strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.331 kb on + strand, within Ga0059261_3175at 3310.332 kb on - strand, within Ga0059261_3175at 3310.332 kb on - strand, within Ga0059261_3175at 3310.332 kb on - strand, within Ga0059261_3175at 3310.345 kb on - strand, within Ga0059261_3175at 3310.384 kb on + strand, within Ga0059261_3175at 3310.385 kb on - strand, within Ga0059261_3175at 3310.385 kb on - strand, within Ga0059261_3175at 3310.385 kb on - strand, within Ga0059261_3175at 3310.392 kb on + strand, within Ga0059261_3175at 3310.460 kb on + strand, within Ga0059261_3175at 3310.460 kb on + strand, within Ga0059261_3175at 3310.460 kb on + strand, within Ga0059261_3175at 3310.460 kb on + strand, within Ga0059261_3175at 3310.460 kb on + strand, within Ga0059261_3175at 3310.461 kb on - strand, within Ga0059261_3175at 3310.461 kb on - strand, within Ga0059261_3175at 3310.461 kb on - strand, within Ga0059261_3175at 3310.461 kb on - strand, within Ga0059261_3175at 3310.461 kb on - strand, within Ga0059261_3175at 3310.624 kb on + strand, within Ga0059261_3175at 3310.624 kb on + strand, within Ga0059261_3175at 3310.624 kb on + strand, within Ga0059261_3175at 3310.624 kb on + strand, within Ga0059261_3175at 3310.625 kb on - strand, within Ga0059261_3175at 3310.736 kb on + strandat 3310.737 kb on - strandat 3310.737 kb on - strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.738 kb on + strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.739 kb on - strandat 3310.747 kb on + strandat 3310.807 kb on - strandat 3310.807 kb on - strandat 3310.807 kb on - strandat 3310.807 kb on - strandat 3310.886 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,309,925 + +0.5
3,309,926 - +0.1
3,310,011 - -0.2
3,310,011 - -0.2
3,310,045 + -0.2
3,310,045 + -0.4
3,310,046 - -0.1
3,310,211 + Ga0059261_3175 0.24 +0.1
3,310,261 + Ga0059261_3175 0.31 -0.3
3,310,261 + Ga0059261_3175 0.31 +0.2
3,310,261 + Ga0059261_3175 0.31 +0.1
3,310,261 + Ga0059261_3175 0.31 -0.7
3,310,261 + Ga0059261_3175 0.31 +0.5
3,310,261 + Ga0059261_3175 0.31 +0.6
3,310,261 + Ga0059261_3175 0.31 -0.6
3,310,262 - Ga0059261_3175 0.31 -0.4
3,310,262 - Ga0059261_3175 0.31 +0.6
3,310,262 - Ga0059261_3175 0.31 +0.1
3,310,262 - Ga0059261_3175 0.31 +0.6
3,310,319 + Ga0059261_3175 0.40 +0.0
3,310,320 - Ga0059261_3175 0.40 -0.4
3,310,320 - Ga0059261_3175 0.40 +0.6
3,310,320 - Ga0059261_3175 0.40 +0.6
3,310,320 - Ga0059261_3175 0.40 +0.2
3,310,320 - Ga0059261_3175 0.40 +0.3
3,310,331 + Ga0059261_3175 0.41 +0.1
3,310,331 + Ga0059261_3175 0.41 +0.6
3,310,331 + Ga0059261_3175 0.41 +0.3
3,310,331 + Ga0059261_3175 0.41 -0.7
3,310,331 + Ga0059261_3175 0.41 +0.1
3,310,331 + Ga0059261_3175 0.41 +0.7
3,310,331 + Ga0059261_3175 0.41 +0.8
3,310,331 + Ga0059261_3175 0.41 -0.9
3,310,331 + Ga0059261_3175 0.41 +0.1
3,310,331 + Ga0059261_3175 0.41 -1.6
3,310,332 - Ga0059261_3175 0.42 +0.1
3,310,332 - Ga0059261_3175 0.42 -0.3
3,310,332 - Ga0059261_3175 0.42 +0.3
3,310,345 - Ga0059261_3175 0.43 +0.8
3,310,384 + Ga0059261_3175 0.49 +0.0
3,310,385 - Ga0059261_3175 0.49 +0.6
3,310,385 - Ga0059261_3175 0.49 +0.4
3,310,385 - Ga0059261_3175 0.49 -0.6
3,310,392 + Ga0059261_3175 0.50 -0.3
3,310,460 + Ga0059261_3175 0.60 -0.5
3,310,460 + Ga0059261_3175 0.60 +1.1
3,310,460 + Ga0059261_3175 0.60 -0.3
3,310,460 + Ga0059261_3175 0.60 +0.5
3,310,460 + Ga0059261_3175 0.60 -0.1
3,310,461 - Ga0059261_3175 0.60 +0.0
3,310,461 - Ga0059261_3175 0.60 -0.5
3,310,461 - Ga0059261_3175 0.60 +0.7
3,310,461 - Ga0059261_3175 0.60 +0.3
3,310,461 - Ga0059261_3175 0.60 -0.2
3,310,624 + Ga0059261_3175 0.84 +0.6
3,310,624 + Ga0059261_3175 0.84 +0.4
3,310,624 + Ga0059261_3175 0.84 -0.1
3,310,624 + Ga0059261_3175 0.84 +0.7
3,310,625 - Ga0059261_3175 0.84 +0.3
3,310,736 + +0.4
3,310,737 - -0.8
3,310,737 - -1.2
3,310,738 + +0.1
3,310,738 + -1.2
3,310,738 + -1.1
3,310,738 + +0.2
3,310,738 + -0.6
3,310,738 + -0.1
3,310,738 + +0.0
3,310,739 - -1.3
3,310,739 - +0.4
3,310,739 - +0.2
3,310,739 - +1.2
3,310,739 - -1.3
3,310,739 - +0.3
3,310,739 - -0.2
3,310,739 - +1.4
3,310,739 - -0.3
3,310,739 - +0.1
3,310,747 + -0.4
3,310,807 - -1.1
3,310,807 - -0.2
3,310,807 - -0.2
3,310,807 - -0.4
3,310,886 + +0.3

Or see this region's nucleotide sequence