Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2678

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2677 and Ga0059261_2678 are separated by 90 nucleotidesGa0059261_2678 and Ga0059261_2679 are separated by 99 nucleotidesGa0059261_2679 and Ga0059261_2680 are separated by 12 nucleotides Ga0059261_2677: Ga0059261_2677 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 2,789,851 to 2,790,861 _2677 Ga0059261_2678: Ga0059261_2678 - DNA-binding ferritin-like protein (oxidative damage protectant), at 2,790,952 to 2,791,449 _2678 Ga0059261_2679: Ga0059261_2679 - Predicted membrane protein, at 2,791,549 to 2,792,115 _2679 Ga0059261_2680: Ga0059261_2680 - hypothetical protein, at 2,792,128 to 2,792,445 _2680 Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -2 -1 0 1at 2790.001 kb on + strand, within Ga0059261_2677at 2790.002 kb on - strand, within Ga0059261_2677at 2790.160 kb on + strand, within Ga0059261_2677at 2790.178 kb on + strand, within Ga0059261_2677at 2790.178 kb on + strand, within Ga0059261_2677at 2790.178 kb on + strand, within Ga0059261_2677at 2790.178 kb on + strand, within Ga0059261_2677at 2790.178 kb on + strand, within Ga0059261_2677at 2790.179 kb on - strand, within Ga0059261_2677at 2790.179 kb on - strand, within Ga0059261_2677at 2790.179 kb on - strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.184 kb on + strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.185 kb on - strand, within Ga0059261_2677at 2790.205 kb on + strand, within Ga0059261_2677at 2790.205 kb on + strand, within Ga0059261_2677at 2790.205 kb on + strand, within Ga0059261_2677at 2790.206 kb on - strand, within Ga0059261_2677at 2790.206 kb on - strand, within Ga0059261_2677at 2790.206 kb on - strand, within Ga0059261_2677at 2790.206 kb on - strand, within Ga0059261_2677at 2790.206 kb on - strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.253 kb on + strand, within Ga0059261_2677at 2790.254 kb on - strand, within Ga0059261_2677at 2790.254 kb on - strand, within Ga0059261_2677at 2790.254 kb on - strand, within Ga0059261_2677at 2790.254 kb on - strand, within Ga0059261_2677at 2790.405 kb on + strand, within Ga0059261_2677at 2790.457 kb on + strand, within Ga0059261_2677at 2790.458 kb on - strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.541 kb on + strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strand, within Ga0059261_2677at 2790.542 kb on - strandat 2790.543 kb on + strand, within Ga0059261_2677at 2790.543 kb on + strand, within Ga0059261_2677at 2790.543 kb on + strand, within Ga0059261_2677at 2790.543 kb on + strand, within Ga0059261_2677at 2790.543 kb on + strandat 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.544 kb on - strand, within Ga0059261_2677at 2790.546 kb on + strand, within Ga0059261_2677at 2790.546 kb on + strand, within Ga0059261_2677at 2790.547 kb on - strand, within Ga0059261_2677at 2790.547 kb on - strand, within Ga0059261_2677at 2790.601 kb on + strand, within Ga0059261_2677at 2790.601 kb on + strand, within Ga0059261_2677at 2790.601 kb on + strand, within Ga0059261_2677at 2790.602 kb on - strand, within Ga0059261_2677at 2790.602 kb on - strand, within Ga0059261_2677at 2790.602 kb on - strand, within Ga0059261_2677at 2790.602 kb on - strand, within Ga0059261_2677at 2790.947 kb on + strandat 2790.948 kb on - strandat 2791.286 kb on + strand, within Ga0059261_2678at 2791.286 kb on + strand, within Ga0059261_2678at 2791.286 kb on + strand, within Ga0059261_2678at 2791.286 kb on + strand, within Ga0059261_2678at 2791.287 kb on - strand, within Ga0059261_2678at 2791.287 kb on - strand, within Ga0059261_2678at 2791.340 kb on + strand, within Ga0059261_2678at 2791.341 kb on - strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.349 kb on + strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.350 kb on - strand, within Ga0059261_2678at 2791.366 kb on - strand, within Ga0059261_2678at 2791.478 kb on + strandat 2791.498 kb on + strandat 2791.498 kb on + strandat 2791.498 kb on + strandat 2791.499 kb on - strandat 2791.499 kb on - strandat 2791.499 kb on - strandat 2791.499 kb on - strandat 2791.499 kb on - strandat 2791.499 kb on - strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.500 kb on + strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.501 kb on - strandat 2791.539 kb on - strandat 2791.551 kb on - strandat 2791.551 kb on - strandat 2791.580 kb on - strandat 2791.580 kb on - strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.126 kb on + strandat 2792.127 kb on - strandat 2792.127 kb on - strandat 2792.127 kb on - strandat 2792.161 kb on - strand, within Ga0059261_2680at 2792.161 kb on - strand, within Ga0059261_2680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,790,001 + Ga0059261_2677 0.15 -0.7
2,790,002 - Ga0059261_2677 0.15 +0.0
2,790,160 + Ga0059261_2677 0.31 -1.0
2,790,178 + Ga0059261_2677 0.32 -0.2
2,790,178 + Ga0059261_2677 0.32 +0.7
2,790,178 + Ga0059261_2677 0.32 -0.1
2,790,178 + Ga0059261_2677 0.32 +1.3
2,790,178 + Ga0059261_2677 0.32 -0.3
2,790,179 - Ga0059261_2677 0.32 +0.1
2,790,179 - Ga0059261_2677 0.32 +0.7
2,790,179 - Ga0059261_2677 0.32 +1.2
2,790,184 + Ga0059261_2677 0.33 +0.3
2,790,184 + Ga0059261_2677 0.33 -0.3
2,790,184 + Ga0059261_2677 0.33 +0.7
2,790,184 + Ga0059261_2677 0.33 +0.2
2,790,184 + Ga0059261_2677 0.33 +0.4
2,790,184 + Ga0059261_2677 0.33 +0.1
2,790,184 + Ga0059261_2677 0.33 +0.3
2,790,184 + Ga0059261_2677 0.33 +0.6
2,790,184 + Ga0059261_2677 0.33 +0.3
2,790,184 + Ga0059261_2677 0.33 +0.3
2,790,184 + Ga0059261_2677 0.33 -1.0
2,790,184 + Ga0059261_2677 0.33 +0.6
2,790,184 + Ga0059261_2677 0.33 -0.3
2,790,184 + Ga0059261_2677 0.33 +0.1
2,790,184 + Ga0059261_2677 0.33 -0.5
2,790,184 + Ga0059261_2677 0.33 +0.0
2,790,184 + Ga0059261_2677 0.33 -1.4
2,790,184 + Ga0059261_2677 0.33 +0.8
2,790,184 + Ga0059261_2677 0.33 -1.0
2,790,184 + Ga0059261_2677 0.33 -0.4
2,790,184 + Ga0059261_2677 0.33 -0.8
2,790,185 - Ga0059261_2677 0.33 -0.1
2,790,185 - Ga0059261_2677 0.33 -0.4
2,790,185 - Ga0059261_2677 0.33 +0.3
2,790,185 - Ga0059261_2677 0.33 +0.5
2,790,185 - Ga0059261_2677 0.33 -0.3
2,790,185 - Ga0059261_2677 0.33 +0.2
2,790,185 - Ga0059261_2677 0.33 +0.3
2,790,185 - Ga0059261_2677 0.33 +0.2
2,790,185 - Ga0059261_2677 0.33 +0.5
2,790,185 - Ga0059261_2677 0.33 +0.3
2,790,185 - Ga0059261_2677 0.33 -0.8
2,790,185 - Ga0059261_2677 0.33 -0.7
2,790,185 - Ga0059261_2677 0.33 +0.3
2,790,185 - Ga0059261_2677 0.33 +0.1
2,790,185 - Ga0059261_2677 0.33 -0.4
2,790,185 - Ga0059261_2677 0.33 -0.8
2,790,205 + Ga0059261_2677 0.35 +0.3
2,790,205 + Ga0059261_2677 0.35 -1.0
2,790,205 + Ga0059261_2677 0.35 -0.2
2,790,206 - Ga0059261_2677 0.35 +1.0
2,790,206 - Ga0059261_2677 0.35 +0.0
2,790,206 - Ga0059261_2677 0.35 -0.7
2,790,206 - Ga0059261_2677 0.35 +1.2
2,790,206 - Ga0059261_2677 0.35 -0.3
2,790,253 + Ga0059261_2677 0.40 +0.7
2,790,253 + Ga0059261_2677 0.40 -0.4
2,790,253 + Ga0059261_2677 0.40 +0.1
2,790,253 + Ga0059261_2677 0.40 +0.3
2,790,253 + Ga0059261_2677 0.40 +1.0
2,790,253 + Ga0059261_2677 0.40 -0.2
2,790,253 + Ga0059261_2677 0.40 -0.9
2,790,254 - Ga0059261_2677 0.40 +0.4
2,790,254 - Ga0059261_2677 0.40 +1.6
2,790,254 - Ga0059261_2677 0.40 -0.2
2,790,254 - Ga0059261_2677 0.40 +0.4
2,790,405 + Ga0059261_2677 0.55 +0.3
2,790,457 + Ga0059261_2677 0.60 +0.1
2,790,458 - Ga0059261_2677 0.60 +0.2
2,790,541 + Ga0059261_2677 0.68 +0.1
2,790,541 + Ga0059261_2677 0.68 +0.0
2,790,541 + Ga0059261_2677 0.68 -0.3
2,790,541 + Ga0059261_2677 0.68 +0.6
2,790,541 + Ga0059261_2677 0.68 -0.8
2,790,541 + Ga0059261_2677 0.68 -0.2
2,790,541 + Ga0059261_2677 0.68 -0.8
2,790,541 + Ga0059261_2677 0.68 +1.1
2,790,541 + Ga0059261_2677 0.68 -0.1
2,790,541 + Ga0059261_2677 0.68 +0.8
2,790,541 + Ga0059261_2677 0.68 -0.3
2,790,542 - Ga0059261_2677 0.68 -0.6
2,790,542 - Ga0059261_2677 0.68 -0.4
2,790,542 - Ga0059261_2677 0.68 -0.4
2,790,542 - Ga0059261_2677 0.68 -0.3
2,790,542 - Ga0059261_2677 0.68 -0.5
2,790,542 - Ga0059261_2677 0.68 +0.2
2,790,542 - Ga0059261_2677 0.68 -0.4
2,790,542 - Ga0059261_2677 0.68 -0.2
2,790,542 - Ga0059261_2677 0.68 -1.2
2,790,542 - -0.5
2,790,543 + Ga0059261_2677 0.68 +0.1
2,790,543 + Ga0059261_2677 0.68 -2.0
2,790,543 + Ga0059261_2677 0.68 -0.9
2,790,543 + Ga0059261_2677 0.68 +0.1
2,790,543 + +0.3
2,790,544 - Ga0059261_2677 0.69 +0.4
2,790,544 - Ga0059261_2677 0.69 +0.7
2,790,544 - Ga0059261_2677 0.69 +0.7
2,790,544 - Ga0059261_2677 0.69 -1.8
2,790,544 - Ga0059261_2677 0.69 +0.0
2,790,544 - Ga0059261_2677 0.69 -0.3
2,790,544 - Ga0059261_2677 0.69 -0.2
2,790,544 - Ga0059261_2677 0.69 +0.1
2,790,544 - Ga0059261_2677 0.69 +0.1
2,790,546 + Ga0059261_2677 0.69 +0.1
2,790,546 + Ga0059261_2677 0.69 -0.2
2,790,547 - Ga0059261_2677 0.69 -0.0
2,790,547 - Ga0059261_2677 0.69 -0.4
2,790,601 + Ga0059261_2677 0.74 -0.2
2,790,601 + Ga0059261_2677 0.74 -0.1
2,790,601 + Ga0059261_2677 0.74 -0.1
2,790,602 - Ga0059261_2677 0.74 -0.2
2,790,602 - Ga0059261_2677 0.74 +0.5
2,790,602 - Ga0059261_2677 0.74 -0.1
2,790,602 - Ga0059261_2677 0.74 -0.6
2,790,947 + -1.0
2,790,948 - +0.2
2,791,286 + Ga0059261_2678 0.67 -0.4
2,791,286 + Ga0059261_2678 0.67 +1.0
2,791,286 + Ga0059261_2678 0.67 -0.4
2,791,286 + Ga0059261_2678 0.67 +0.1
2,791,287 - Ga0059261_2678 0.67 -0.0
2,791,287 - Ga0059261_2678 0.67 -0.0
2,791,340 + Ga0059261_2678 0.78 -0.1
2,791,341 - Ga0059261_2678 0.78 +0.9
2,791,349 + Ga0059261_2678 0.80 -0.3
2,791,349 + Ga0059261_2678 0.80 +0.0
2,791,349 + Ga0059261_2678 0.80 +0.6
2,791,349 + Ga0059261_2678 0.80 +0.3
2,791,349 + Ga0059261_2678 0.80 -0.6
2,791,349 + Ga0059261_2678 0.80 +0.7
2,791,349 + Ga0059261_2678 0.80 +0.1
2,791,350 - Ga0059261_2678 0.80 -0.7
2,791,350 - Ga0059261_2678 0.80 -0.1
2,791,350 - Ga0059261_2678 0.80 +0.6
2,791,350 - Ga0059261_2678 0.80 -0.3
2,791,350 - Ga0059261_2678 0.80 -0.8
2,791,350 - Ga0059261_2678 0.80 +0.2
2,791,350 - Ga0059261_2678 0.80 -1.4
2,791,366 - Ga0059261_2678 0.83 +0.2
2,791,478 + +0.3
2,791,498 + +1.1
2,791,498 + -0.2
2,791,498 + +0.2
2,791,499 - -0.2
2,791,499 - +0.7
2,791,499 - -0.9
2,791,499 - +0.3
2,791,499 - -0.1
2,791,499 - +0.4
2,791,500 + +0.1
2,791,500 + +0.6
2,791,500 + -0.2
2,791,500 + -0.3
2,791,500 + -0.2
2,791,500 + -0.4
2,791,500 + +0.1
2,791,500 + -0.1
2,791,501 - -0.4
2,791,501 - -0.2
2,791,501 - -0.6
2,791,501 - +1.3
2,791,501 - +0.2
2,791,501 - +0.4
2,791,501 - -0.3
2,791,501 - -0.1
2,791,539 - +0.7
2,791,551 - -0.0
2,791,551 - +0.9
2,791,580 - -0.4
2,791,580 - -0.3
2,792,126 + +0.6
2,792,126 + -0.0
2,792,126 + -0.6
2,792,126 + +0.0
2,792,126 + -0.8
2,792,127 - -0.3
2,792,127 - -0.4
2,792,127 - +0.3
2,792,161 - Ga0059261_2680 0.10 +0.1
2,792,161 - Ga0059261_2680 0.10 +0.1

Or see this region's nucleotide sequence