Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2516

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2514 and Ga0059261_2515 are separated by 76 nucleotidesGa0059261_2515 and Ga0059261_2516 are separated by 68 nucleotidesGa0059261_2516 and Ga0059261_2517 are separated by 76 nucleotidesGa0059261_2517 and Ga0059261_2518 are separated by 4 nucleotides Ga0059261_2514: Ga0059261_2514 - phosphoenolpyruvate-protein phosphotransferase, at 2,604,815 to 2,607,094 _2514 Ga0059261_2515: Ga0059261_2515 - hypothetical protein, at 2,607,171 to 2,607,896 _2515 Ga0059261_2516: Ga0059261_2516 - Dioxygenases related to 2-nitropropane dioxygenase, at 2,607,965 to 2,608,983 _2516 Ga0059261_2517: Ga0059261_2517 - Predicted metal-dependent hydrolase of the TIM-barrel fold, at 2,609,060 to 2,609,908 _2517 Ga0059261_2518: Ga0059261_2518 - Metal-dependent hydrolase, at 2,609,913 to 2,610,725 _2518 Position (kb) 2607 2608 2609Strain fitness (log2 ratio) -2 -1 0 1at 2607.106 kb on - strandat 2607.148 kb on + strandat 2607.221 kb on + strandat 2607.238 kb on + strandat 2607.238 kb on + strandat 2607.238 kb on + strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.239 kb on - strandat 2607.328 kb on + strand, within Ga0059261_2515at 2607.328 kb on + strand, within Ga0059261_2515at 2607.329 kb on - strand, within Ga0059261_2515at 2607.337 kb on + strand, within Ga0059261_2515at 2607.338 kb on - strand, within Ga0059261_2515at 2607.347 kb on - strand, within Ga0059261_2515at 2607.490 kb on + strand, within Ga0059261_2515at 2607.491 kb on - strand, within Ga0059261_2515at 2607.491 kb on - strand, within Ga0059261_2515at 2607.491 kb on - strand, within Ga0059261_2515at 2607.496 kb on + strand, within Ga0059261_2515at 2607.497 kb on - strand, within Ga0059261_2515at 2607.497 kb on - strand, within Ga0059261_2515at 2607.497 kb on - strand, within Ga0059261_2515at 2607.497 kb on - strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.602 kb on + strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.603 kb on - strand, within Ga0059261_2515at 2607.604 kb on + strand, within Ga0059261_2515at 2607.604 kb on + strandat 2607.604 kb on + strand, within Ga0059261_2515at 2607.605 kb on - strand, within Ga0059261_2515at 2607.712 kb on + strand, within Ga0059261_2515at 2607.712 kb on + strand, within Ga0059261_2515at 2607.713 kb on - strand, within Ga0059261_2515at 2607.713 kb on - strand, within Ga0059261_2515at 2607.713 kb on - strand, within Ga0059261_2515at 2607.916 kb on + strandat 2607.916 kb on + strandat 2607.917 kb on - strandat 2607.917 kb on - strandat 2607.917 kb on - strandat 2607.917 kb on - strandat 2607.921 kb on - strandat 2607.933 kb on - strandat 2609.046 kb on + strandat 2609.046 kb on + strandat 2609.046 kb on + strandat 2609.046 kb on + strandat 2609.046 kb on + strandat 2609.046 kb on + strandat 2609.047 kb on - strandat 2609.180 kb on + strand, within Ga0059261_2517at 2609.180 kb on + strand, within Ga0059261_2517at 2609.354 kb on + strand, within Ga0059261_2517at 2609.355 kb on - strand, within Ga0059261_2517at 2609.355 kb on - strand, within Ga0059261_2517at 2609.599 kb on + strand, within Ga0059261_2517at 2609.600 kb on - strand, within Ga0059261_2517at 2609.600 kb on - strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.674 kb on + strand, within Ga0059261_2517at 2609.675 kb on - strand, within Ga0059261_2517at 2609.675 kb on - strand, within Ga0059261_2517at 2609.675 kb on - strand, within Ga0059261_2517at 2609.678 kb on + strand, within Ga0059261_2517at 2609.678 kb on + strand, within Ga0059261_2517at 2609.678 kb on + strand, within Ga0059261_2517at 2609.679 kb on + strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.679 kb on - strand, within Ga0059261_2517at 2609.770 kb on + strand, within Ga0059261_2517at 2609.770 kb on + strand, within Ga0059261_2517at 2609.770 kb on + strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.771 kb on - strand, within Ga0059261_2517at 2609.790 kb on - strand, within Ga0059261_2517at 2609.790 kb on - strand, within Ga0059261_2517at 2609.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,607,106 - -0.3
2,607,148 + +1.3
2,607,221 + +0.5
2,607,238 + +0.0
2,607,238 + -0.9
2,607,238 + -0.1
2,607,239 - +0.8
2,607,239 - +0.2
2,607,239 - -0.8
2,607,239 - +0.0
2,607,239 - -0.5
2,607,239 - +0.0
2,607,239 - -0.1
2,607,328 + Ga0059261_2515 0.22 +0.2
2,607,328 + Ga0059261_2515 0.22 -0.1
2,607,329 - Ga0059261_2515 0.22 +0.2
2,607,337 + Ga0059261_2515 0.23 +0.0
2,607,338 - Ga0059261_2515 0.23 -0.6
2,607,347 - Ga0059261_2515 0.24 -0.2
2,607,490 + Ga0059261_2515 0.44 -0.1
2,607,491 - Ga0059261_2515 0.44 +0.2
2,607,491 - Ga0059261_2515 0.44 -0.4
2,607,491 - Ga0059261_2515 0.44 +0.1
2,607,496 + Ga0059261_2515 0.45 +0.0
2,607,497 - Ga0059261_2515 0.45 -1.3
2,607,497 - Ga0059261_2515 0.45 -0.6
2,607,497 - Ga0059261_2515 0.45 -0.1
2,607,497 - Ga0059261_2515 0.45 +0.0
2,607,602 + Ga0059261_2515 0.59 -0.8
2,607,602 + Ga0059261_2515 0.59 -0.2
2,607,602 + Ga0059261_2515 0.59 +0.3
2,607,602 + Ga0059261_2515 0.59 +0.3
2,607,602 + Ga0059261_2515 0.59 +0.9
2,607,602 + Ga0059261_2515 0.59 -0.3
2,607,602 + Ga0059261_2515 0.59 -0.1
2,607,603 - Ga0059261_2515 0.60 -0.7
2,607,603 - Ga0059261_2515 0.60 +0.5
2,607,603 - Ga0059261_2515 0.60 +0.3
2,607,603 - Ga0059261_2515 0.60 -0.2
2,607,603 - Ga0059261_2515 0.60 +0.7
2,607,603 - Ga0059261_2515 0.60 +0.2
2,607,604 + Ga0059261_2515 0.60 -0.5
2,607,604 + +1.3
2,607,604 + Ga0059261_2515 0.60 +0.1
2,607,605 - Ga0059261_2515 0.60 +0.3
2,607,712 + Ga0059261_2515 0.75 -0.4
2,607,712 + Ga0059261_2515 0.75 +0.1
2,607,713 - Ga0059261_2515 0.75 -0.4
2,607,713 - Ga0059261_2515 0.75 +0.0
2,607,713 - Ga0059261_2515 0.75 +0.2
2,607,916 + +0.3
2,607,916 + -0.0
2,607,917 - -0.0
2,607,917 - +0.4
2,607,917 - +0.2
2,607,917 - -0.2
2,607,921 - +0.1
2,607,933 - -0.5
2,609,046 + -0.3
2,609,046 + -0.3
2,609,046 + +0.9
2,609,046 + -0.2
2,609,046 + -1.0
2,609,046 + -1.0
2,609,047 - -0.3
2,609,180 + Ga0059261_2517 0.14 +0.3
2,609,180 + Ga0059261_2517 0.14 +0.0
2,609,354 + Ga0059261_2517 0.35 +0.6
2,609,355 - Ga0059261_2517 0.35 -0.2
2,609,355 - Ga0059261_2517 0.35 -0.1
2,609,599 + Ga0059261_2517 0.63 +0.1
2,609,600 - Ga0059261_2517 0.64 +0.3
2,609,600 - Ga0059261_2517 0.64 +0.7
2,609,674 + Ga0059261_2517 0.72 +0.0
2,609,674 + Ga0059261_2517 0.72 -0.1
2,609,674 + Ga0059261_2517 0.72 +0.5
2,609,674 + Ga0059261_2517 0.72 -0.4
2,609,674 + Ga0059261_2517 0.72 +0.9
2,609,674 + Ga0059261_2517 0.72 +0.3
2,609,674 + Ga0059261_2517 0.72 +0.5
2,609,675 - Ga0059261_2517 0.72 +0.2
2,609,675 - Ga0059261_2517 0.72 -0.3
2,609,675 - Ga0059261_2517 0.72 -1.7
2,609,678 + Ga0059261_2517 0.73 +0.3
2,609,678 + Ga0059261_2517 0.73 +0.3
2,609,678 + Ga0059261_2517 0.73 +0.4
2,609,679 + Ga0059261_2517 0.73 -0.1
2,609,679 - Ga0059261_2517 0.73 -0.2
2,609,679 - Ga0059261_2517 0.73 -1.5
2,609,679 - Ga0059261_2517 0.73 -1.8
2,609,679 - Ga0059261_2517 0.73 +0.4
2,609,679 - Ga0059261_2517 0.73 -0.1
2,609,679 - Ga0059261_2517 0.73 +0.4
2,609,679 - Ga0059261_2517 0.73 -0.4
2,609,679 - Ga0059261_2517 0.73 +1.5
2,609,679 - Ga0059261_2517 0.73 +0.3
2,609,679 - Ga0059261_2517 0.73 -0.1
2,609,770 + Ga0059261_2517 0.84 +0.6
2,609,770 + Ga0059261_2517 0.84 +0.5
2,609,770 + Ga0059261_2517 0.84 +0.6
2,609,771 - Ga0059261_2517 0.84 +1.0
2,609,771 - Ga0059261_2517 0.84 +0.6
2,609,771 - Ga0059261_2517 0.84 -0.6
2,609,771 - Ga0059261_2517 0.84 +0.0
2,609,771 - Ga0059261_2517 0.84 +0.7
2,609,771 - Ga0059261_2517 0.84 -0.1
2,609,790 - Ga0059261_2517 0.86 -0.2
2,609,790 - Ga0059261_2517 0.86 -0.6
2,609,925 - -0.8

Or see this region's nucleotide sequence