Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1506

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1504 and Ga0059261_1505 are separated by 20 nucleotidesGa0059261_1505 and Ga0059261_1506 overlap by 4 nucleotidesGa0059261_1506 and Ga0059261_1507 are separated by 38 nucleotidesGa0059261_1507 and Ga0059261_1508 are separated by 37 nucleotides Ga0059261_1504: Ga0059261_1504 - Uncharacterized protein conserved in bacteria, at 1,588,497 to 1,588,979 _1504 Ga0059261_1505: Ga0059261_1505 - Lyzozyme M1 (1,4-beta-N-acetylmuramidase), at 1,589,000 to 1,589,677 _1505 Ga0059261_1506: Ga0059261_1506 - cytidine deaminase (EC 3.5.4.5), at 1,589,674 to 1,590,138 _1506 Ga0059261_1507: Ga0059261_1507 - deoxycytidine triphosphate deaminase, at 1,590,177 to 1,590,731 _1507 Ga0059261_1508: Ga0059261_1508 - Tetratricopeptide repeat, at 1,590,769 to 1,591,131 _1508 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1588.776 kb on + strand, within Ga0059261_1504at 1588.776 kb on + strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.777 kb on - strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.797 kb on + strand, within Ga0059261_1504at 1588.798 kb on - strand, within Ga0059261_1504at 1588.798 kb on - strand, within Ga0059261_1504at 1588.887 kb on + strand, within Ga0059261_1504at 1588.981 kb on + strandat 1589.072 kb on + strand, within Ga0059261_1505at 1589.073 kb on - strand, within Ga0059261_1505at 1589.105 kb on + strandat 1589.105 kb on + strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.106 kb on - strand, within Ga0059261_1505at 1589.189 kb on + strand, within Ga0059261_1505at 1589.261 kb on - strand, within Ga0059261_1505at 1589.261 kb on - strand, within Ga0059261_1505at 1589.261 kb on - strandat 1589.261 kb on - strand, within Ga0059261_1505at 1589.470 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.519 kb on + strand, within Ga0059261_1505at 1589.520 kb on - strand, within Ga0059261_1505at 1589.582 kb on + strand, within Ga0059261_1505at 1589.582 kb on + strand, within Ga0059261_1505at 1589.583 kb on - strand, within Ga0059261_1505at 1589.583 kb on - strand, within Ga0059261_1505at 1589.629 kb on + strandat 1589.629 kb on + strandat 1589.756 kb on - strand, within Ga0059261_1506at 1589.756 kb on - strand, within Ga0059261_1506at 1589.836 kb on + strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.837 kb on - strand, within Ga0059261_1506at 1589.915 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.040 kb on + strand, within Ga0059261_1506at 1590.041 kb on - strand, within Ga0059261_1506at 1590.041 kb on - strand, within Ga0059261_1506at 1590.041 kb on - strand, within Ga0059261_1506at 1590.041 kb on - strand, within Ga0059261_1506at 1590.068 kb on - strand, within Ga0059261_1506at 1590.068 kb on - strand, within Ga0059261_1506at 1590.068 kb on - strand, within Ga0059261_1506at 1590.165 kb on + strandat 1590.165 kb on + strandat 1590.276 kb on + strand, within Ga0059261_1507at 1590.277 kb on - strand, within Ga0059261_1507at 1590.277 kb on - strand, within Ga0059261_1507at 1590.338 kb on + strand, within Ga0059261_1507at 1590.453 kb on + strand, within Ga0059261_1507at 1590.504 kb on + strand, within Ga0059261_1507at 1590.504 kb on + strand, within Ga0059261_1507at 1590.505 kb on - strand, within Ga0059261_1507at 1590.505 kb on - strand, within Ga0059261_1507at 1590.505 kb on - strand, within Ga0059261_1507at 1590.609 kb on + strand, within Ga0059261_1507at 1590.693 kb on + strandat 1590.693 kb on + strandat 1590.694 kb on - strandat 1590.695 kb on + strandat 1590.695 kb on + strandat 1590.695 kb on + strandat 1590.696 kb on - strandat 1590.696 kb on - strandat 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.893 kb on + strand, within Ga0059261_1508at 1590.894 kb on - strand, within Ga0059261_1508at 1590.894 kb on - strand, within Ga0059261_1508at 1590.894 kb on - strand, within Ga0059261_1508at 1590.894 kb on - strand, within Ga0059261_1508at 1590.894 kb on - strand, within Ga0059261_1508at 1590.932 kb on + strand, within Ga0059261_1508at 1590.933 kb on - strand, within Ga0059261_1508at 1590.933 kb on - strand, within Ga0059261_1508at 1591.017 kb on - strand, within Ga0059261_1508at 1591.046 kb on + strand, within Ga0059261_1508at 1591.046 kb on + strand, within Ga0059261_1508at 1591.047 kb on - strand, within Ga0059261_1508at 1591.047 kb on - strand, within Ga0059261_1508at 1591.117 kb on + strandat 1591.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,588,776 + Ga0059261_1504 0.58 -0.2
1,588,776 + Ga0059261_1504 0.58 -0.5
1,588,777 - Ga0059261_1504 0.58 +0.5
1,588,777 - Ga0059261_1504 0.58 -0.7
1,588,777 - Ga0059261_1504 0.58 +1.0
1,588,797 + Ga0059261_1504 0.62 +0.3
1,588,797 + Ga0059261_1504 0.62 +0.2
1,588,797 + Ga0059261_1504 0.62 -0.9
1,588,797 + Ga0059261_1504 0.62 +0.0
1,588,797 + Ga0059261_1504 0.62 +0.5
1,588,797 + Ga0059261_1504 0.62 -1.3
1,588,798 - Ga0059261_1504 0.62 -0.1
1,588,798 - Ga0059261_1504 0.62 -0.0
1,588,887 + Ga0059261_1504 0.81 +0.8
1,588,981 + -0.1
1,589,072 + Ga0059261_1505 0.11 -0.0
1,589,073 - Ga0059261_1505 0.11 +0.3
1,589,105 + +1.0
1,589,105 + Ga0059261_1505 0.15 -0.7
1,589,106 - Ga0059261_1505 0.16 -0.3
1,589,106 - Ga0059261_1505 0.16 +0.3
1,589,106 - Ga0059261_1505 0.16 +2.6
1,589,189 + Ga0059261_1505 0.28 -0.3
1,589,261 - Ga0059261_1505 0.38 +0.1
1,589,261 - Ga0059261_1505 0.38 -0.4
1,589,261 - +1.3
1,589,261 - Ga0059261_1505 0.38 +0.8
1,589,470 + Ga0059261_1505 0.69 +0.7
1,589,519 + Ga0059261_1505 0.77 +0.6
1,589,519 + Ga0059261_1505 0.77 +1.4
1,589,519 + Ga0059261_1505 0.77 +0.1
1,589,519 + Ga0059261_1505 0.77 +1.1
1,589,519 + Ga0059261_1505 0.77 +0.0
1,589,519 + Ga0059261_1505 0.77 +1.1
1,589,520 - Ga0059261_1505 0.77 +1.3
1,589,582 + Ga0059261_1505 0.86 +0.4
1,589,582 + Ga0059261_1505 0.86 +0.4
1,589,583 - Ga0059261_1505 0.86 -0.2
1,589,583 - Ga0059261_1505 0.86 +0.6
1,589,629 + +0.1
1,589,629 + -0.0
1,589,756 - Ga0059261_1506 0.18 +0.1
1,589,756 - Ga0059261_1506 0.18 -0.2
1,589,836 + Ga0059261_1506 0.35 +0.2
1,589,837 - Ga0059261_1506 0.35 +0.8
1,589,837 - Ga0059261_1506 0.35 +0.2
1,589,837 - Ga0059261_1506 0.35 +0.1
1,589,837 - Ga0059261_1506 0.35 -0.3
1,589,837 - Ga0059261_1506 0.35 +1.2
1,589,837 - Ga0059261_1506 0.35 -0.1
1,589,837 - Ga0059261_1506 0.35 -0.0
1,589,915 + Ga0059261_1506 0.52 -0.2
1,590,040 + Ga0059261_1506 0.79 +0.3
1,590,040 + Ga0059261_1506 0.79 +1.0
1,590,040 + Ga0059261_1506 0.79 +0.4
1,590,040 + Ga0059261_1506 0.79 +0.2
1,590,040 + Ga0059261_1506 0.79 -0.6
1,590,040 + Ga0059261_1506 0.79 -0.4
1,590,040 + Ga0059261_1506 0.79 +0.7
1,590,040 + Ga0059261_1506 0.79 -1.5
1,590,040 + Ga0059261_1506 0.79 -0.0
1,590,040 + Ga0059261_1506 0.79 -0.3
1,590,040 + Ga0059261_1506 0.79 +0.2
1,590,041 - Ga0059261_1506 0.79 +0.1
1,590,041 - Ga0059261_1506 0.79 +0.3
1,590,041 - Ga0059261_1506 0.79 -0.1
1,590,041 - Ga0059261_1506 0.79 -0.7
1,590,068 - Ga0059261_1506 0.85 -0.6
1,590,068 - Ga0059261_1506 0.85 +0.5
1,590,068 - Ga0059261_1506 0.85 +0.3
1,590,165 + -1.6
1,590,165 + -3.0
1,590,276 + Ga0059261_1507 0.18 -2.2
1,590,277 - Ga0059261_1507 0.18 -1.3
1,590,277 - Ga0059261_1507 0.18 -1.3
1,590,338 + Ga0059261_1507 0.29 -3.2
1,590,453 + Ga0059261_1507 0.50 -1.7
1,590,504 + Ga0059261_1507 0.59 -2.4
1,590,504 + Ga0059261_1507 0.59 -2.3
1,590,505 - Ga0059261_1507 0.59 -0.3
1,590,505 - Ga0059261_1507 0.59 -0.5
1,590,505 - Ga0059261_1507 0.59 -1.0
1,590,609 + Ga0059261_1507 0.78 -2.2
1,590,693 + -0.5
1,590,693 + -2.0
1,590,694 - -1.0
1,590,695 + -2.2
1,590,695 + -1.9
1,590,695 + -1.7
1,590,696 - -1.3
1,590,696 - -1.5
1,590,893 + Ga0059261_1508 0.34 +0.0
1,590,893 + Ga0059261_1508 0.34 -0.5
1,590,893 + Ga0059261_1508 0.34 +2.7
1,590,893 + Ga0059261_1508 0.34 -0.8
1,590,893 + Ga0059261_1508 0.34 +0.2
1,590,893 + Ga0059261_1508 0.34 -0.7
1,590,893 + Ga0059261_1508 0.34 -1.3
1,590,894 - Ga0059261_1508 0.34 -1.1
1,590,894 - Ga0059261_1508 0.34 -0.1
1,590,894 - Ga0059261_1508 0.34 +0.4
1,590,894 - Ga0059261_1508 0.34 +0.2
1,590,894 - Ga0059261_1508 0.34 +0.5
1,590,932 + Ga0059261_1508 0.45 -0.1
1,590,933 - Ga0059261_1508 0.45 -0.4
1,590,933 - Ga0059261_1508 0.45 -0.1
1,591,017 - Ga0059261_1508 0.68 +0.4
1,591,046 + Ga0059261_1508 0.76 -0.8
1,591,046 + Ga0059261_1508 0.76 -0.1
1,591,047 - Ga0059261_1508 0.77 +0.1
1,591,047 - Ga0059261_1508 0.77 +0.1
1,591,117 + -0.2
1,591,117 + -0.2

Or see this region's nucleotide sequence