Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01614

Experiment: PYE with A22 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_01613 and CCNA_01614 overlap by 4 nucleotidesCCNA_01614 and CCNA_01615 are separated by 4 nucleotides CCNA_01613: CCNA_01613 - rod shape-determining protein MreC, at 1,734,410 to 1,735,450 _01613 CCNA_01614: CCNA_01614 - hypothetical protein, at 1,735,447 to 1,735,962 _01614 CCNA_01615: CCNA_01615 - cell elongation specific D,D-transpeptidase, at 1,735,967 to 1,737,985 _01615 Position (kb) 1735 1736Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1735.281 kb on + strand, within CCNA_01613at 1735.432 kb on + strandat 1735.434 kb on - strandat 1735.441 kb on + strandat 1735.902 kb on + strand, within CCNA_01614at 1735.953 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with A22 0.005 mg/ml
remove
1,735,281 + CCNA_01613 0.84 -2.2
1,735,432 + +0.3
1,735,434 - +2.4
1,735,441 + +0.9
1,735,902 + CCNA_01614 0.88 -0.9
1,735,953 + +3.0

Or see this region's nucleotide sequence