Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01364

Experiment: PYE with A22 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with A22 0.005 mg/ml
1,479,173	-		CCNA_01363	0.44	+1.5
1,479,174	+		CCNA_01363	0.44	+1.0
1,479,276	+		CCNA_01363	0.51	+0.6
1,479,276	+		CCNA_01363	0.51	-0.9
1,479,276	+		CCNA_01363	0.51	-0.6
1,479,284	-		CCNA_01363	0.52	-0.3
1,479,284	-		CCNA_01363	0.52	+0.1
1,479,284	-		CCNA_01363	0.52	-0.6
1,479,284	-		CCNA_01363	0.52	+0.0
1,479,284	-		CCNA_01363	0.52	-0.1
1,479,284	-		CCNA_01363	0.52	-0.8
1,479,356	-		CCNA_01363	0.57	-1.0
1,479,366	+		CCNA_01363	0.58	-0.6
1,479,396	+		CCNA_01363	0.60	+0.9
1,479,439	-		CCNA_01363	0.63	-0.3
1,479,441	+		CCNA_01363	0.64	+1.7
1,479,501	+		CCNA_01363	0.68	+0.8
1,479,501	+		CCNA_01363	0.68	+2.1
1,479,506	+		CCNA_01363	0.68	-0.8
1,479,547	+		CCNA_01363	0.71	+0.2
1,479,691	+		CCNA_01363	0.82	+1.3
1,479,706	+		CCNA_01363	0.83	-2.2
1,479,706	+		CCNA_01363	0.83	+1.2
1,479,706	+		CCNA_01363	0.83	+0.1
1,479,711	+		CCNA_01363	0.83	-0.1
1,479,719	-		CCNA_01363	0.84	-1.0
1,479,738	+		CCNA_01363	0.85	-0.3
1,479,741	-		CCNA_01363	0.86	+0.6
1,479,741	-		CCNA_01363	0.86	-0.4
1,479,744	+		CCNA_01363	0.86	-1.5
1,479,744	+		CCNA_01363	0.86	+0.5
1,479,746	-		CCNA_01363	0.86	-0.5
1,479,754	+		CCNA_01363	0.87	-0.7
1,479,786	-		CCNA_01363	0.89	-0.5
1,479,792	-		CCNA_01363	0.89	-1.2
1,479,799	+		CCNA_01363	0.90	+0.9
1,479,810	+				-0.9
1,479,811	+				-0.4
1,479,811	+				-3.0
1,479,811	+				-0.5
1,479,818	-				-0.3
1,479,819	-				-1.4
1,479,819	-				+0.4
1,479,845	+				-0.4
1,479,858	+				-0.6
1,479,866	-				+0.4
1,479,879	+				-0.5
1,479,887	-				-0.1
1,479,887	-				-0.1
1,479,905	+				+0.4
1,479,905	+				+0.6
1,479,913	-				-0.7
1,479,917	+				-1.0
1,479,925	-				-0.6
1,479,936	-				+0.8
1,479,937	+				+0.7
1,479,992	+				-0.3
1,479,992	+				+0.8
1,480,001	+				-0.9
1,480,009	+				-0.4
1,480,049	+				+0.8
1,480,049	+				+0.3
1,480,068	-				-1.9
1,480,068	-				-0.0
1,480,083	-				-1.5
1,480,098	+				-0.6
1,480,099	+				-1.6
1,480,099	+				-1.9
1,480,107	-				+0.3
1,480,107	-				+0.6
1,480,144	-				+0.1
1,480,146	+				-0.7
1,480,147	+				-1.0
1,480,154	-				+1.5
1,480,154	-				-2.1
1,480,224	+				+0.8
1,480,237	-				-2.3
1,480,245	-				+1.0
1,480,261	+				-0.9
1,480,276	+		CCNA_01364	0.11	+1.4
1,480,276	+				+3.0
1,480,276	+		CCNA_01364	0.11	+0.3
1,480,276	+		CCNA_01364	0.11	+0.9
1,480,276	+		CCNA_01364	0.11	+1.8
1,480,276	+		CCNA_01364	0.11	-0.2
1,480,276	+		CCNA_01364	0.11	+1.8
1,480,276	+		CCNA_01364	0.11	+0.5
1,480,281	+		CCNA_01364	0.11	-0.5
1,480,284	-		CCNA_01364	0.12	+1.1
1,480,284	-		CCNA_01364	0.12	-2.3
1,480,284	-		CCNA_01364	0.12	-0.4
1,480,284	-		CCNA_01364	0.12	+0.2
1,480,284	-		CCNA_01364	0.12	-1.7
1,480,284	-		CCNA_01364	0.12	+1.4
1,480,284	-		CCNA_01364	0.12	-0.0
1,480,302	+		CCNA_01364	0.13	+0.4
1,480,302	+		CCNA_01364	0.13	+1.4
1,480,310	+		CCNA_01364	0.14	+0.5
1,480,338	+		CCNA_01364	0.17	-0.3
1,480,338	+		CCNA_01364	0.17	-0.8
1,480,338	+		CCNA_01364	0.17	-0.3
1,480,338	+		CCNA_01364	0.17	-0.7
1,480,338	+		CCNA_01364	0.17	-0.4
1,480,344	+		CCNA_01364	0.17	+0.8
1,480,346	-		CCNA_01364	0.18	+0.7
1,480,346	-		CCNA_01364	0.18	-0.0
1,480,346	-		CCNA_01364	0.18	-0.3
1,480,346	-		CCNA_01364	0.18	-1.7
1,480,346	-		CCNA_01364	0.18	-1.2
1,480,388	-		CCNA_01364	0.22	+0.1
1,480,439	-		CCNA_01364	0.27	-2.6
1,480,447	+		CCNA_01364	0.27	-1.2
1,480,474	+		CCNA_01364	0.30	+0.1
1,480,520	-		CCNA_01364	0.35	-0.8
1,480,520	-		CCNA_01364	0.35	+0.1
1,480,533	+		CCNA_01364	0.36	+0.3
1,480,620	+		CCNA_01364	0.44	+0.2
1,480,654	+		CCNA_01364	0.48	-0.0
1,480,662	+		CCNA_01364	0.48	+0.4
1,480,662	-		CCNA_01364	0.48	-0.4
1,480,691	-		CCNA_01364	0.51	-1.9
1,480,747	+		CCNA_01364	0.57	+0.7
1,480,747	+		CCNA_01364	0.57	+0.4
1,480,747	+		CCNA_01364	0.57	+1.7
1,480,755	-		CCNA_01364	0.57	+1.5
1,480,775	+		CCNA_01364	0.59	+0.5
1,480,783	-		CCNA_01364	0.60	-1.2
1,480,783	-		CCNA_01364	0.60	-0.2
1,480,783	-		CCNA_01364	0.60	+0.1
1,480,783	-		CCNA_01364	0.60	-1.4
1,480,783	-		CCNA_01364	0.60	-0.0
1,480,800	-		CCNA_01364	0.62	-2.0
1,480,807	-		CCNA_01364	0.62	+0.4
1,480,812	-		CCNA_01364	0.63	-1.2
1,480,828	-		CCNA_01364	0.65	-1.3
1,480,834	+		CCNA_01364	0.65	+1.3
1,480,834	+		CCNA_01364	0.65	-0.0
1,480,849	-		CCNA_01364	0.67	-0.6
1,480,851	+		CCNA_01364	0.67	+1.6
1,480,914	+		CCNA_01364	0.73	+1.3
1,480,936	+		CCNA_01364	0.75	+2.1
1,481,036	-		CCNA_01364	0.85	+1.0
1,481,036	-		CCNA_01364	0.85	-0.4
1,481,065	-		CCNA_01364	0.88	+0.4
1,481,108	+				+0.3
1,481,108	+				+0.6
1,481,111	-				-0.7
1,481,116	-				-1.3
1,481,116	-				-1.0
1,481,116	-				-0.6
1,481,194	+				+1.2
1,481,194	+				-0.1
1,481,194	+				-1.2
1,481,202	-				+1.1
1,481,202	-				-1.1
1,481,202	-				-0.1
1,481,202	-				-0.3
1,481,202	-				-0.2
1,481,202	-				-0.2
1,481,202	-				+0.3
1,481,202	-				+1.4
1,481,202	-				+1.5
1,481,202	-				+0.8
1,481,207	+				-0.5
1,481,217	+				-0.3
1,481,217	+				+0.1
1,481,225	-				+0.8
1,481,262	+		CCNA_01365	0.13	-0.3
1,481,290	+		CCNA_01365	0.18	-0.1
1,481,301	+		CCNA_01365	0.20	-0.5
1,481,404	-		CCNA_01365	0.40	+0.6
1,481,433	-		CCNA_01365	0.46	+1.0
1,481,502	-		CCNA_01365	0.59	+0.5
1,481,511	+		CCNA_01365	0.61	-0.4
1,481,514	-		CCNA_01365	0.61	-0.7
1,481,518	+		CCNA_01365	0.62	+1.3
1,481,519	-		CCNA_01365	0.62	+0.5
1,481,519	-		CCNA_01365	0.62	+1.4
1,481,519	-		CCNA_01365	0.62	-0.2
1,481,526	-		CCNA_01365	0.64	+0.5
1,481,526	-		CCNA_01365	0.64	+0.6
1,481,526	-		CCNA_01365	0.64	-1.6
1,481,526	-		CCNA_01365	0.64	+0.1
1,481,526	-		CCNA_01365	0.64	+0.9
1,481,547	+		CCNA_01365	0.68	+0.3
1,481,555	-		CCNA_01365	0.69	+0.8
1,481,570	-		CCNA_01365	0.72	+0.7
1,481,570	-		CCNA_01365	0.72	+0.1
1,481,570	-				+2.0
1,481,609	+		CCNA_01365	0.80	-2.3
1,481,609	+		CCNA_01365	0.80	-1.0
1,481,609	+		CCNA_01365	0.80	-0.9
1,481,617	-		CCNA_01365	0.81	+1.0
1,481,637	+		CCNA_01365	0.85	-1.5
1,481,652	-		CCNA_01365	0.88	-0.3
1,481,652	-		CCNA_01365	0.88	+0.8
1,481,671	+				-0.9
1,481,679	-				+1.5
1,481,710	-				+0.5
1,481,726	-				+2.1
1,481,996	-				-0.4
1,482,010	-				-1.0
1,482,021	-				-0.3
1,482,029	+				+0.7
1,482,061	+		CCNA_01366	0.18	-0.1
1,482,061	+		CCNA_01366	0.18	-2.7
1,482,116	-		CCNA_01366	0.43	-1.6
1,482,127	-		CCNA_01366	0.48	-0.6
1,482,167	+		CCNA_01366	0.65	-1.4
1,482,184	-		CCNA_01366	0.73	-0.2
1,482,184	-		CCNA_01366	0.73	-1.9