Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16885

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16880 and BPHYT_RS16885 are separated by 231 nucleotidesBPHYT_RS16885 and BPHYT_RS16890 are separated by 112 nucleotidesBPHYT_RS16890 and BPHYT_RS16895 are separated by 66 nucleotides BPHYT_RS16880: BPHYT_RS16880 - malic enzyme, at 3,828,208 to 3,830,547 _RS16880 BPHYT_RS16885: BPHYT_RS16885 - thiamine monophosphate kinase, at 3,830,779 to 3,831,777 _RS16885 BPHYT_RS16890: BPHYT_RS16890 - phosphatidylglycerophosphatase, at 3,831,890 to 3,832,348 _RS16890 BPHYT_RS16895: BPHYT_RS16895 - competence damage-inducible protein A, at 3,832,415 to 3,832,915 _RS16895 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3829.936 kb on - strand, within BPHYT_RS16880at 3830.502 kb on + strandat 3830.502 kb on + strandat 3830.532 kb on - strandat 3830.551 kb on - strandat 3830.551 kb on - strandat 3830.551 kb on - strandat 3830.551 kb on - strandat 3830.556 kb on + strandat 3830.557 kb on - strandat 3830.587 kb on - strandat 3831.805 kb on + strandat 3832.541 kb on - strand, within BPHYT_RS16895at 3832.583 kb on + strand, within BPHYT_RS16895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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3,829,936 - BPHYT_RS16880 0.74 -0.6
3,830,502 + -3.8
3,830,502 + -3.8
3,830,532 - -0.1
3,830,551 - -0.2
3,830,551 - -0.1
3,830,551 - -0.8
3,830,551 - +4.2
3,830,556 + +0.5
3,830,557 - +0.4
3,830,587 - +0.4
3,831,805 + +0.0
3,832,541 - BPHYT_RS16895 0.25 -0.4
3,832,583 + BPHYT_RS16895 0.34 +0.0

Or see this region's nucleotide sequence