Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01115

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01105 and BPHYT_RS01110 are separated by 114 nucleotidesBPHYT_RS01110 and BPHYT_RS01115 are separated by 195 nucleotidesBPHYT_RS01115 and BPHYT_RS01120 are separated by 139 nucleotides BPHYT_RS01105: BPHYT_RS01105 - hypothetical protein, at 255,197 to 255,916 _RS01105 BPHYT_RS01110: BPHYT_RS01110 - hypothetical protein, at 256,031 to 256,237 _RS01110 BPHYT_RS01115: BPHYT_RS01115 - hypothetical protein, at 256,433 to 256,678 _RS01115 BPHYT_RS01120: BPHYT_RS01120 - plasmid partitioning protein ParB, at 256,818 to 258,902 _RS01120 Position (kb) 256 257Strain fitness (log2 ratio) -1 0 1at 256.566 kb on + strand, within BPHYT_RS01115at 256.584 kb on + strand, within BPHYT_RS01115at 256.617 kb on + strand, within BPHYT_RS01115at 256.681 kb on + strandat 256.681 kb on + strandat 256.681 kb on + strandat 256.712 kb on - strandat 256.809 kb on + strandat 256.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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256,566 + BPHYT_RS01115 0.54 -0.6
256,584 + BPHYT_RS01115 0.61 -1.2
256,617 + BPHYT_RS01115 0.75 -1.2
256,681 + -0.1
256,681 + -0.1
256,681 + -0.2
256,712 - -0.5
256,809 + -0.5
256,810 - -1.4

Or see this region's nucleotide sequence