Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_933

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_932 and Ac3H11_933 are separated by 9 nucleotidesAc3H11_933 and Ac3H11_1044 are separated by 94 nucleotidesAc3H11_1044 and Ac3H11_934 are separated by 78 nucleotides Ac3H11_932 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 46,745 to 47,980 _932 Ac3H11_933 - Probable transmembrane drug efflux protein, at 47,990 to 51,172 _933 Ac3H11_1044 - tRNA-Leu-TAG, at 51,267 to 51,350 _1044 Ac3H11_934 - Cell division trigger factor (EC 5.2.1.8), at 51,429 to 52,742 _934 Position (kb) 47 48 49 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.111 kb on + strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.112 kb on - strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.327 kb on + strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.328 kb on - strand, within Ac3H11_932at 47.642 kb on + strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.643 kb on - strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.741 kb on + strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.742 kb on - strand, within Ac3H11_932at 47.894 kb on + strandat 47.895 kb on - strandat 48.063 kb on - strandat 48.063 kb on - strandat 48.063 kb on - strandat 48.101 kb on + strandat 48.102 kb on - strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.164 kb on + strandat 48.165 kb on - strandat 48.165 kb on - strandat 48.165 kb on - strandat 48.242 kb on + strandat 48.242 kb on + strandat 48.263 kb on + strandat 48.264 kb on - strandat 48.264 kb on - strandat 48.341 kb on + strand, within Ac3H11_933at 48.342 kb on - strand, within Ac3H11_933at 48.342 kb on - strand, within Ac3H11_933at 48.367 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.374 kb on + strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.375 kb on - strand, within Ac3H11_933at 48.431 kb on + strand, within Ac3H11_933at 48.431 kb on + strand, within Ac3H11_933at 48.432 kb on - strand, within Ac3H11_933at 48.432 kb on - strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.443 kb on + strand, within Ac3H11_933at 48.444 kb on - strand, within Ac3H11_933at 48.470 kb on + strand, within Ac3H11_933at 48.470 kb on + strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.471 kb on - strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.812 kb on + strand, within Ac3H11_933at 48.813 kb on - strand, within Ac3H11_933at 48.813 kb on - strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.816 kb on + strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 48.817 kb on - strand, within Ac3H11_933at 49.124 kb on + strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.125 kb on - strand, within Ac3H11_933at 49.202 kb on + strand, within Ac3H11_933at 49.202 kb on + strand, within Ac3H11_933at 49.203 kb on - strand, within Ac3H11_933at 49.203 kb on - strandat 49.349 kb on + strand, within Ac3H11_933at 49.443 kb on - strand, within Ac3H11_933at 49.505 kb on + strand, within Ac3H11_933at 49.506 kb on - strand, within Ac3H11_933at 49.506 kb on - strand, within Ac3H11_933at 49.506 kb on - strand, within Ac3H11_933at 49.517 kb on + strand, within Ac3H11_933at 49.518 kb on - strand, within Ac3H11_933at 49.518 kb on - strand, within Ac3H11_933at 49.518 kb on - strand, within Ac3H11_933at 49.619 kb on + strand, within Ac3H11_933at 49.620 kb on - strand, within Ac3H11_933at 50.236 kb on + strand, within Ac3H11_933at 50.236 kb on + strand, within Ac3H11_933at 50.237 kb on - strand, within Ac3H11_933at 50.237 kb on - strand, within Ac3H11_933at 50.237 kb on - strand, within Ac3H11_933at 50.402 kb on + strand, within Ac3H11_933at 50.402 kb on + strand, within Ac3H11_933at 50.402 kb on + strand, within Ac3H11_933at 50.402 kb on + strand, within Ac3H11_933at 50.402 kb on + strand, within Ac3H11_933at 50.403 kb on - strand, within Ac3H11_933at 50.501 kb on + strand, within Ac3H11_933at 50.501 kb on + strand, within Ac3H11_933at 50.502 kb on - strand, within Ac3H11_933at 50.502 kb on - strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 50.835 kb on + strand, within Ac3H11_933at 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.116 kb on + strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.117 kb on - strandat 51.201 kb on + strandat 51.201 kb on + strandat 51.202 kb on - strandat 51.260 kb on + strandat 51.261 kb on - strandat 51.261 kb on - strandat 51.287 kb on - strand, within Ac3H11_1044at 51.287 kb on - strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.301 kb on + strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.302 kb on - strand, within Ac3H11_1044at 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.416 kb on - strandat 51.424 kb on + strandat 51.424 kb on + strandat 51.424 kb on + strandat 51.425 kb on - strandat 51.425 kb on - strandat 51.437 kb on + strandat 51.437 kb on + strandat 51.438 kb on - strandat 51.600 kb on + strand, within Ac3H11_934at 51.600 kb on + strand, within Ac3H11_934at 51.601 kb on - strand, within Ac3H11_934at 51.606 kb on + strand, within Ac3H11_934at 51.606 kb on + strand, within Ac3H11_934at 51.618 kb on + strand, within Ac3H11_934at 51.618 kb on + strand, within Ac3H11_934at 51.619 kb on - strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.095 kb on + strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934at 52.096 kb on - strand, within Ac3H11_934

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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47,111 + Ac3H11_932 0.30 +0.2
47,111 + Ac3H11_932 0.30 -0.8
47,111 + Ac3H11_932 0.30 -0.1
47,111 + Ac3H11_932 0.30 -0.6
47,112 - Ac3H11_932 0.30 +0.4
47,112 - Ac3H11_932 0.30 -0.8
47,327 + Ac3H11_932 0.47 -0.1
47,327 + Ac3H11_932 0.47 +0.3
47,328 - Ac3H11_932 0.47 +0.1
47,328 - Ac3H11_932 0.47 +0.0
47,328 - Ac3H11_932 0.47 -1.0
47,328 - Ac3H11_932 0.47 -0.4
47,642 + Ac3H11_932 0.73 -0.1
47,643 - Ac3H11_932 0.73 +0.1
47,643 - Ac3H11_932 0.73 -0.4
47,643 - Ac3H11_932 0.73 +0.4
47,643 - Ac3H11_932 0.73 +0.3
47,643 - Ac3H11_932 0.73 +0.6
47,741 + Ac3H11_932 0.81 -0.3
47,741 + Ac3H11_932 0.81 +0.0
47,741 + Ac3H11_932 0.81 -0.6
47,742 - Ac3H11_932 0.81 +0.0
47,742 - Ac3H11_932 0.81 -1.1
47,742 - Ac3H11_932 0.81 +0.4
47,742 - Ac3H11_932 0.81 -0.2
47,894 + -1.0
47,895 - -0.1
48,063 - -0.5
48,063 - -0.1
48,063 - -0.3
48,101 + -0.8
48,102 - -0.4
48,164 + +0.7
48,164 + +0.5
48,164 + -0.3
48,164 + -0.2
48,164 + -0.6
48,165 - +0.4
48,165 - -0.0
48,165 - -0.8
48,242 + -0.2
48,242 + +0.2
48,263 + -0.7
48,264 - -0.0
48,264 - +0.0
48,341 + Ac3H11_933 0.11 +0.4
48,342 - Ac3H11_933 0.11 -0.8
48,342 - Ac3H11_933 0.11 +0.1
48,367 + Ac3H11_933 0.12 -0.6
48,374 + Ac3H11_933 0.12 +0.3
48,374 + Ac3H11_933 0.12 -1.6
48,374 + Ac3H11_933 0.12 -0.2
48,375 - Ac3H11_933 0.12 +0.5
48,375 - Ac3H11_933 0.12 -0.7
48,375 - Ac3H11_933 0.12 -0.7
48,375 - Ac3H11_933 0.12 +0.4
48,375 - Ac3H11_933 0.12 +0.2
48,375 - Ac3H11_933 0.12 +0.7
48,431 + Ac3H11_933 0.14 +1.8
48,431 + Ac3H11_933 0.14 -0.2
48,432 - Ac3H11_933 0.14 -0.2
48,432 - Ac3H11_933 0.14 -0.7
48,443 + Ac3H11_933 0.14 -0.3
48,443 + Ac3H11_933 0.14 -0.2
48,443 + Ac3H11_933 0.14 -1.1
48,443 + Ac3H11_933 0.14 -1.1
48,444 - Ac3H11_933 0.14 -0.2
48,470 + Ac3H11_933 0.15 -1.8
48,470 + Ac3H11_933 0.15 -0.2
48,471 - Ac3H11_933 0.15 +0.5
48,471 - Ac3H11_933 0.15 +0.9
48,471 - Ac3H11_933 0.15 +0.3
48,812 + Ac3H11_933 0.26 -1.1
48,812 + Ac3H11_933 0.26 -0.5
48,812 + Ac3H11_933 0.26 +1.4
48,813 - Ac3H11_933 0.26 +0.2
48,813 - Ac3H11_933 0.26 -0.5
48,816 + Ac3H11_933 0.26 +0.2
48,816 + Ac3H11_933 0.26 -0.3
48,816 + Ac3H11_933 0.26 -1.4
48,816 + Ac3H11_933 0.26 +0.6
48,816 + Ac3H11_933 0.26 -0.5
48,816 + Ac3H11_933 0.26 +0.6
48,816 + Ac3H11_933 0.26 -0.2
48,817 - Ac3H11_933 0.26 +0.4
48,817 - Ac3H11_933 0.26 +0.3
48,817 - Ac3H11_933 0.26 +0.9
48,817 - Ac3H11_933 0.26 -0.1
49,124 + Ac3H11_933 0.36 +0.1
49,125 - Ac3H11_933 0.36 -0.1
49,125 - Ac3H11_933 0.36 -0.2
49,125 - Ac3H11_933 0.36 +0.3
49,125 - Ac3H11_933 0.36 +1.0
49,125 - Ac3H11_933 0.36 -0.3
49,125 - Ac3H11_933 0.36 -1.0
49,202 + Ac3H11_933 0.38 -0.5
49,202 + Ac3H11_933 0.38 +0.7
49,203 - Ac3H11_933 0.38 -0.5
49,203 - +0.6
49,349 + Ac3H11_933 0.43 -0.4
49,443 - Ac3H11_933 0.46 +0.4
49,505 + Ac3H11_933 0.48 -0.3
49,506 - Ac3H11_933 0.48 +0.6
49,506 - Ac3H11_933 0.48 -0.9
49,506 - Ac3H11_933 0.48 -2.0
49,517 + Ac3H11_933 0.48 +0.8
49,518 - Ac3H11_933 0.48 +0.3
49,518 - Ac3H11_933 0.48 -0.4
49,518 - Ac3H11_933 0.48 +0.2
49,619 + Ac3H11_933 0.51 +0.1
49,620 - Ac3H11_933 0.51 -0.1
50,236 + Ac3H11_933 0.71 -0.4
50,236 + Ac3H11_933 0.71 -0.2
50,237 - Ac3H11_933 0.71 +0.8
50,237 - Ac3H11_933 0.71 +1.2
50,237 - Ac3H11_933 0.71 +0.3
50,402 + Ac3H11_933 0.76 +0.8
50,402 + Ac3H11_933 0.76 -0.1
50,402 + Ac3H11_933 0.76 -0.0
50,402 + Ac3H11_933 0.76 +0.4
50,402 + Ac3H11_933 0.76 -0.3
50,403 - Ac3H11_933 0.76 +0.3
50,501 + Ac3H11_933 0.79 +0.4
50,501 + Ac3H11_933 0.79 -1.2
50,502 - Ac3H11_933 0.79 -0.4
50,502 - Ac3H11_933 0.79 +0.1
50,835 + Ac3H11_933 0.89 -0.7
50,835 + Ac3H11_933 0.89 -1.3
50,835 + Ac3H11_933 0.89 +0.5
50,835 + Ac3H11_933 0.89 +0.3
51,116 + +0.5
51,116 + -0.7
51,116 + -0.0
51,116 + -0.2
51,116 + +0.8
51,116 + +0.3
51,116 + +0.7
51,117 - -1.2
51,117 - -1.0
51,117 - -1.6
51,117 - -1.1
51,117 - -0.9
51,117 - +0.4
51,117 - -0.3
51,117 - +1.3
51,117 - -0.1
51,117 - +0.5
51,117 - -1.9
51,117 - +0.8
51,117 - +0.6
51,201 + -0.8
51,201 + -0.4
51,202 - -1.4
51,260 + -0.8
51,261 - -2.0
51,261 - -2.6
51,287 - Ac3H11_1044 0.24 +0.2
51,287 - Ac3H11_1044 0.24 -1.6
51,301 + Ac3H11_1044 0.40 -0.2
51,301 + Ac3H11_1044 0.40 -3.8
51,301 + Ac3H11_1044 0.40 -1.4
51,301 + Ac3H11_1044 0.40 +0.6
51,301 + Ac3H11_1044 0.40 -2.3
51,302 - Ac3H11_1044 0.42 -0.6
51,302 - Ac3H11_1044 0.42 -1.4
51,302 - Ac3H11_1044 0.42 -2.8
51,302 - Ac3H11_1044 0.42 -2.0
51,302 - Ac3H11_1044 0.42 -1.2
51,302 - Ac3H11_1044 0.42 -2.4
51,415 + -1.0
51,415 + -2.1
51,415 + -4.2
51,415 + -0.8
51,415 + -2.4
51,415 + -2.1
51,416 - -2.5
51,416 - -1.9
51,416 - -1.6
51,416 - -3.5
51,416 - -0.8
51,416 - +1.0
51,416 - -1.7
51,416 - -1.4
51,416 - -3.3
51,424 + -1.0
51,424 + -3.0
51,424 + -2.4
51,425 - -3.4
51,425 - -1.2
51,437 + -1.8
51,437 + -2.6
51,438 - -2.8
51,600 + Ac3H11_934 0.13 -1.0
51,600 + Ac3H11_934 0.13 -3.2
51,601 - Ac3H11_934 0.13 -1.9
51,606 + Ac3H11_934 0.13 -1.8
51,606 + Ac3H11_934 0.13 -0.7
51,618 + Ac3H11_934 0.14 -2.8
51,618 + Ac3H11_934 0.14 -0.0
51,619 - Ac3H11_934 0.14 -4.0
52,095 + Ac3H11_934 0.51 -0.9
52,095 + Ac3H11_934 0.51 -1.0
52,095 + Ac3H11_934 0.51 -2.4
52,095 + Ac3H11_934 0.51 -1.6
52,096 - Ac3H11_934 0.51 -1.3
52,096 - Ac3H11_934 0.51 -3.0

Or see this region's nucleotide sequence