Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3865

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3863 and Ac3H11_3864 are separated by 87 nucleotidesAc3H11_3864 and Ac3H11_3865 are separated by 219 nucleotidesAc3H11_3865 and Ac3H11_3866 are separated by 168 nucleotides Ac3H11_3863 - Transcriptional activator protein LysR, at 80,851 to 81,798 _3863 Ac3H11_3864 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 81,886 to 82,389 _3864 Ac3H11_3865 - hypothetical protein, at 82,609 to 83,403 _3865 Ac3H11_3866 - Regulatory protein, LuxR, at 83,572 to 84,744 _3866 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 81.703 kb on + strand, within Ac3H11_3863at 81.797 kb on - strandat 81.808 kb on - strandat 81.810 kb on - strandat 81.810 kb on - strandat 81.815 kb on + strandat 81.815 kb on + strandat 81.816 kb on - strandat 82.479 kb on - strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.497 kb on + strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.498 kb on - strandat 82.568 kb on + strandat 82.568 kb on + strandat 82.597 kb on + strandat 82.597 kb on + strandat 82.597 kb on + strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.598 kb on - strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.642 kb on + strandat 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.852 kb on + strand, within Ac3H11_3865at 82.853 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.946 kb on - strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.987 kb on + strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 82.988 kb on - strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.080 kb on + strand, within Ac3H11_3865at 83.081 kb on - strand, within Ac3H11_3865at 83.113 kb on + strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.114 kb on - strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.218 kb on + strand, within Ac3H11_3865at 83.219 kb on - strand, within Ac3H11_3865at 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.356 kb on + strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.357 kb on - strandat 83.506 kb on + strandat 83.506 kb on + strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.507 kb on - strandat 83.571 kb on + strandat 83.791 kb on + strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.792 kb on - strand, within Ac3H11_3866at 83.895 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.932 kb on + strand, within Ac3H11_3866at 83.933 kb on - strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.016 kb on + strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.017 kb on - strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866at 84.211 kb on + strand, within Ac3H11_3866

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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81,703 + Ac3H11_3863 0.90 -0.2
81,797 - +0.5
81,808 - +0.9
81,810 - -0.5
81,810 - -0.1
81,815 + +0.2
81,815 + +0.5
81,816 - +0.3
82,479 - +0.2
82,497 + -0.8
82,497 + -0.3
82,497 + -0.9
82,497 + -0.8
82,497 + -1.0
82,497 + +0.1
82,497 + -0.1
82,497 + +1.3
82,497 + -1.0
82,498 - -0.6
82,498 - +0.2
82,498 - -1.4
82,498 - -0.5
82,498 - +0.5
82,498 - +0.1
82,498 - +0.4
82,568 + -0.2
82,568 + -0.0
82,597 + -1.2
82,597 + +1.7
82,597 + +0.1
82,598 - -0.2
82,598 - -0.3
82,598 - -0.1
82,598 - +0.1
82,598 - +0.0
82,598 - -0.4
82,598 - +0.3
82,642 + -1.0
82,642 + -1.6
82,642 + -0.5
82,852 + Ac3H11_3865 0.31 +0.1
82,852 + Ac3H11_3865 0.31 +0.0
82,852 + Ac3H11_3865 0.31 -0.0
82,852 + Ac3H11_3865 0.31 +0.2
82,852 + Ac3H11_3865 0.31 -0.6
82,852 + Ac3H11_3865 0.31 -0.2
82,853 - Ac3H11_3865 0.31 +0.3
82,946 - Ac3H11_3865 0.42 -1.3
82,946 - Ac3H11_3865 0.42 +0.9
82,946 - Ac3H11_3865 0.42 -0.1
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 -0.4
82,987 + Ac3H11_3865 0.48 +1.2
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 -0.6
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 -2.1
82,987 + Ac3H11_3865 0.48 +0.4
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 +0.3
82,987 + Ac3H11_3865 0.48 +0.6
82,987 + Ac3H11_3865 0.48 +0.5
82,987 + Ac3H11_3865 0.48 +1.2
82,987 + Ac3H11_3865 0.48 +0.2
82,987 + Ac3H11_3865 0.48 -0.9
82,987 + Ac3H11_3865 0.48 +0.0
82,987 + Ac3H11_3865 0.48 +1.1
82,987 + Ac3H11_3865 0.48 +0.2
82,987 + Ac3H11_3865 0.48 +0.2
82,987 + Ac3H11_3865 0.48 -0.1
82,987 + Ac3H11_3865 0.48 +0.1
82,987 + Ac3H11_3865 0.48 +0.8
82,987 + Ac3H11_3865 0.48 -0.6
82,987 + Ac3H11_3865 0.48 +0.3
82,987 + Ac3H11_3865 0.48 -1.4
82,987 + Ac3H11_3865 0.48 -1.9
82,987 + Ac3H11_3865 0.48 +1.0
82,988 - Ac3H11_3865 0.48 -0.1
82,988 - Ac3H11_3865 0.48 -0.1
82,988 - Ac3H11_3865 0.48 +0.2
82,988 - Ac3H11_3865 0.48 +0.0
82,988 - Ac3H11_3865 0.48 -0.3
82,988 - Ac3H11_3865 0.48 +0.0
82,988 - Ac3H11_3865 0.48 +0.4
82,988 - Ac3H11_3865 0.48 +0.4
82,988 - Ac3H11_3865 0.48 +1.7
82,988 - Ac3H11_3865 0.48 +1.0
82,988 - Ac3H11_3865 0.48 -0.7
82,988 - Ac3H11_3865 0.48 -0.0
82,988 - Ac3H11_3865 0.48 -0.2
82,988 - Ac3H11_3865 0.48 +1.0
82,988 - Ac3H11_3865 0.48 -0.1
82,988 - Ac3H11_3865 0.48 -1.5
82,988 - Ac3H11_3865 0.48 -1.0
82,988 - Ac3H11_3865 0.48 +0.2
82,988 - Ac3H11_3865 0.48 -0.4
83,080 + Ac3H11_3865 0.59 -0.2
83,080 + Ac3H11_3865 0.59 +0.1
83,081 - Ac3H11_3865 0.59 -0.0
83,113 + Ac3H11_3865 0.63 -0.1
83,114 - Ac3H11_3865 0.64 +0.4
83,114 - Ac3H11_3865 0.64 +0.1
83,218 + Ac3H11_3865 0.77 +1.7
83,218 + Ac3H11_3865 0.77 +0.5
83,218 + Ac3H11_3865 0.77 +0.5
83,218 + Ac3H11_3865 0.77 +0.5
83,219 - Ac3H11_3865 0.77 +0.4
83,356 + +0.7
83,356 + +0.9
83,356 + +0.2
83,356 + -0.4
83,356 + -0.3
83,356 + +0.3
83,356 + -0.5
83,356 + -1.9
83,356 + -0.6
83,356 + +0.3
83,356 + +0.5
83,357 - -1.5
83,357 - +0.1
83,357 - -0.3
83,357 - +0.4
83,506 + +2.0
83,506 + -0.8
83,507 - -0.1
83,507 - -1.5
83,507 - -0.1
83,507 - -0.4
83,507 - -0.6
83,507 - +0.2
83,571 + +0.4
83,791 + Ac3H11_3866 0.19 -0.5
83,792 - Ac3H11_3866 0.19 +0.6
83,792 - Ac3H11_3866 0.19 +0.4
83,895 + Ac3H11_3866 0.28 +0.3
83,932 + Ac3H11_3866 0.31 -0.7
83,932 + Ac3H11_3866 0.31 +0.1
83,932 + Ac3H11_3866 0.31 -0.3
83,933 - Ac3H11_3866 0.31 -0.4
84,016 + Ac3H11_3866 0.38 +0.0
84,016 + Ac3H11_3866 0.38 -0.0
84,016 + Ac3H11_3866 0.38 -0.3
84,016 + Ac3H11_3866 0.38 -0.3
84,017 - Ac3H11_3866 0.38 -0.1
84,017 - Ac3H11_3866 0.38 +0.2
84,017 - Ac3H11_3866 0.38 +0.3
84,017 - Ac3H11_3866 0.38 -0.8
84,017 - Ac3H11_3866 0.38 -1.2
84,211 + Ac3H11_3866 0.54 +0.0
84,211 + Ac3H11_3866 0.54 -1.0

Or see this region's nucleotide sequence