Experiment: Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_378 and Ac3H11_379 overlap by 10 nucleotides Ac3H11_379 and Ac3H11_380 are separated by 244 nucleotides Ac3H11_380 and Ac3H11_381 are separated by 521 nucleotides
Ac3H11_378 - hypothetical protein, at 56,179 to 56,418
_378
Ac3H11_379 - hypothetical protein, at 56,409 to 56,615
_379
Ac3H11_380 - hypothetical protein, at 56,860 to 57,036
_380
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Position (kb) 56
57 Strain fitness (log2 ratio) -1
0
1
2 at 55.686 kb on - strand at 55.686 kb on - strand at 55.686 kb on - strand at 55.776 kb on - strand at 55.837 kb on - strand at 56.038 kb on + strand at 56.038 kb on + strand at 56.038 kb on + strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.039 kb on - strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.405 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.616 kb on + strand at 56.617 kb on - strand at 56.617 kb on - strand at 56.746 kb on + strand at 56.785 kb on + strand at 56.786 kb on - strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.825 kb on + strand at 56.825 kb on + strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.826 kb on - strand at 56.862 kb on - strand at 56.897 kb on + strand, within Ac3H11_380 at 56.897 kb on + strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.898 kb on - strand, within Ac3H11_380 at 56.905 kb on + strand, within Ac3H11_380 at 56.906 kb on - strand, within Ac3H11_380 at 56.993 kb on + strand, within Ac3H11_380 at 57.049 kb on + strand at 57.049 kb on + strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.050 kb on - strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.103 kb on + strand at 57.144 kb on + strand at 57.144 kb on + strand at 57.145 kb on - strand at 57.145 kb on - strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.148 kb on + strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.149 kb on - strand at 57.170 kb on + strand at 57.171 kb on - strand at 57.195 kb on - strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.273 kb on + strand at 57.274 kb on - strand at 57.274 kb on - strand at 57.613 kb on + strand at 57.614 kb on - strand at 57.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml remove 55,686 - +0.3 55,686 - -0.2 55,686 - -0.6 55,776 - +0.9 55,837 - -0.5 56,038 + +0.1 56,038 + -0.4 56,038 + +0.6 56,039 - -0.7 56,039 - +0.1 56,039 - -0.2 56,039 - -1.1 56,405 + +0.0 56,405 + +0.2 56,405 + -0.2 56,405 + -0.3 56,405 + -1.5 56,616 + -0.5 56,616 + -1.0 56,616 + +1.0 56,616 + -0.7 56,616 + -0.3 56,616 + -1.4 56,616 + +0.6 56,617 - +0.4 56,617 - +0.4 56,746 + -1.0 56,785 + +0.3 56,786 - +0.0 56,795 - -0.0 56,795 - +0.5 56,825 + +0.1 56,825 + +0.2 56,826 - -0.4 56,826 - -0.7 56,826 - +0.2 56,862 - -0.3 56,897 + Ac3H11_380 0.21 -0.8 56,897 + Ac3H11_380 0.21 +0.4 56,898 - Ac3H11_380 0.21 +1.2 56,898 - Ac3H11_380 0.21 -0.3 56,905 + Ac3H11_380 0.25 -1.0 56,906 - Ac3H11_380 0.26 -0.9 56,993 + Ac3H11_380 0.75 -0.5 57,049 + -0.3 57,049 + -0.8 57,050 - +1.5 57,050 - +0.5 57,050 - +0.1 57,103 + +1.5 57,103 + +0.0 57,103 + -0.3 57,144 + -0.5 57,144 + -1.2 57,145 - +0.5 57,145 - -0.3 57,148 + -0.4 57,148 + +0.1 57,148 + +0.0 57,148 + -1.1 57,148 + -0.3 57,148 + +1.3 57,148 + +0.0 57,148 + -0.3 57,148 + +0.8 57,148 + -0.1 57,148 + -0.3 57,148 + -0.5 57,149 - +1.1 57,149 - +0.1 57,149 - +2.0 57,149 - +0.2 57,149 - -0.1 57,149 - +0.6 57,149 - +0.1 57,149 - -0.2 57,149 - +0.6 57,149 - -0.4 57,170 + +0.0 57,171 - -1.0 57,195 - -0.7 57,273 + +0.3 57,273 + -0.6 57,273 + -0.6 57,273 + +0.5 57,274 - -0.2 57,274 - -0.2 57,613 + -0.2 57,614 - -0.9 57,614 - +0.5
Or see this region's nucleotide sequence