Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_225

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_224 and Ac3H11_225 are separated by 181 nucleotidesAc3H11_225 and Ac3H11_226 are separated by 171 nucleotides Ac3H11_224 - Heavy metal RND efflux outer membrane protein, CzcC family, at 37,856 to 39,136 _224 Ac3H11_225 - Cobalt-zinc-cadmium resistance protein czcI precursor, at 39,318 to 39,674 _225 Ac3H11_226 - hemin ABC transporter ATP binding protein, at 39,846 to 40,691 _226 Position (kb) 39 40Strain fitness (log2 ratio) -1 0 1at 39.602 kb on - strand, within Ac3H11_225at 39.602 kb on - strand, within Ac3H11_225at 39.689 kb on + strandat 39.689 kb on + strandat 39.690 kb on - strandat 39.690 kb on - strandat 39.690 kb on - strandat 39.741 kb on + strandat 39.865 kb on + strandat 40.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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39,602 - Ac3H11_225 0.80 -1.2
39,602 - Ac3H11_225 0.80 +0.0
39,689 + +0.2
39,689 + -0.4
39,690 - +0.0
39,690 - -0.1
39,690 - -0.3
39,741 + -0.6
39,865 + +0.1
40,673 + +0.1

Or see this region's nucleotide sequence