Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2196

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2195 and Ac3H11_2196 are separated by 12 nucleotidesAc3H11_2196 and Ac3H11_2197 are separated by 21 nucleotidesAc3H11_2197 and Ac3H11_2198 are separated by 135 nucleotides Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528 _2195 Ac3H11_2196 - hypothetical protein, at 426,541 to 427,050 _2196 Ac3H11_2197 - putative membrane protein, at 427,072 to 427,326 _2197 Ac3H11_2198 - hypothetical protein, at 427,462 to 428,148 _2198 Position (kb) 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.893 kb on + strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.894 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 425.987 kb on - strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.109 kb on + strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.110 kb on - strand, within Ac3H11_2195at 426.118 kb on + strand, within Ac3H11_2195at 426.118 kb on + strand, within Ac3H11_2195at 426.119 kb on - strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.220 kb on + strand, within Ac3H11_2195at 426.221 kb on - strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.223 kb on + strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.224 kb on - strand, within Ac3H11_2195at 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.472 kb on + strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.473 kb on - strandat 426.526 kb on + strandat 426.526 kb on + strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.527 kb on - strandat 426.542 kb on + strandat 426.542 kb on + strandat 426.543 kb on - strandat 426.647 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.689 kb on + strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 426.690 kb on - strand, within Ac3H11_2196at 427.051 kb on - strandat 427.100 kb on + strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.101 kb on - strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.166 kb on + strand, within Ac3H11_2197at 427.167 kb on - strand, within Ac3H11_2197at 427.167 kb on - strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.190 kb on + strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.191 kb on - strand, within Ac3H11_2197at 427.413 kb on + strandat 427.413 kb on + strandat 427.414 kb on - strandat 427.414 kb on - strandat 427.583 kb on + strand, within Ac3H11_2198at 427.584 kb on - strand, within Ac3H11_2198

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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425,893 + Ac3H11_2195 0.62 +0.4
425,893 + Ac3H11_2195 0.62 -0.5
425,893 + Ac3H11_2195 0.62 -0.5
425,893 + Ac3H11_2195 0.62 -0.1
425,893 + Ac3H11_2195 0.62 -0.3
425,894 - Ac3H11_2195 0.63 -0.4
425,894 - Ac3H11_2195 0.63 +0.9
425,894 - Ac3H11_2195 0.63 -0.1
425,894 - Ac3H11_2195 0.63 -0.0
425,894 - Ac3H11_2195 0.63 +0.6
425,894 - Ac3H11_2195 0.63 -0.3
425,894 - Ac3H11_2195 0.63 -0.2
425,894 - Ac3H11_2195 0.63 +0.1
425,987 - Ac3H11_2195 0.68 -0.4
425,987 - Ac3H11_2195 0.68 -0.6
425,987 - Ac3H11_2195 0.68 +0.9
426,109 + Ac3H11_2195 0.75 +0.7
426,109 + Ac3H11_2195 0.75 -0.1
426,109 + Ac3H11_2195 0.75 +0.2
426,109 + Ac3H11_2195 0.75 +0.8
426,109 + Ac3H11_2195 0.75 -0.1
426,109 + Ac3H11_2195 0.75 +0.0
426,109 + Ac3H11_2195 0.75 +0.2
426,109 + Ac3H11_2195 0.75 +1.7
426,110 - Ac3H11_2195 0.75 +0.4
426,110 - Ac3H11_2195 0.75 -0.3
426,110 - Ac3H11_2195 0.75 -0.0
426,110 - Ac3H11_2195 0.75 +0.0
426,110 - Ac3H11_2195 0.75 +0.2
426,110 - Ac3H11_2195 0.75 -0.1
426,110 - Ac3H11_2195 0.75 +1.7
426,110 - Ac3H11_2195 0.75 -0.3
426,110 - Ac3H11_2195 0.75 -0.6
426,110 - Ac3H11_2195 0.75 +0.1
426,110 - Ac3H11_2195 0.75 +0.1
426,118 + Ac3H11_2195 0.76 -1.0
426,118 + Ac3H11_2195 0.76 -0.4
426,119 - Ac3H11_2195 0.76 -0.6
426,220 + Ac3H11_2195 0.82 +0.5
426,220 + Ac3H11_2195 0.82 -0.1
426,220 + Ac3H11_2195 0.82 -0.6
426,220 + Ac3H11_2195 0.82 -0.1
426,221 - Ac3H11_2195 0.82 -0.2
426,223 + Ac3H11_2195 0.82 +0.3
426,223 + Ac3H11_2195 0.82 +0.0
426,223 + Ac3H11_2195 0.82 +0.0
426,223 + Ac3H11_2195 0.82 +0.0
426,224 - Ac3H11_2195 0.82 +0.6
426,224 - Ac3H11_2195 0.82 +0.3
426,224 - Ac3H11_2195 0.82 +0.3
426,472 + -0.4
426,472 + -0.4
426,472 + +0.3
426,472 + -0.1
426,472 + -0.7
426,472 + -1.1
426,472 + -0.8
426,473 - +0.2
426,473 - +1.1
426,473 - -0.4
426,473 - +0.6
426,526 + -0.3
426,526 + +0.8
426,527 - +0.3
426,527 - -0.1
426,527 - +0.0
426,527 - +1.2
426,542 + -0.6
426,542 + +0.4
426,543 - -0.6
426,647 + Ac3H11_2196 0.21 +1.5
426,689 + Ac3H11_2196 0.29 +1.4
426,689 + Ac3H11_2196 0.29 +0.3
426,689 + Ac3H11_2196 0.29 +0.6
426,689 + Ac3H11_2196 0.29 +1.2
426,689 + Ac3H11_2196 0.29 +0.9
426,689 + Ac3H11_2196 0.29 -1.3
426,689 + Ac3H11_2196 0.29 +1.2
426,689 + Ac3H11_2196 0.29 +0.9
426,689 + Ac3H11_2196 0.29 +0.2
426,689 + Ac3H11_2196 0.29 -0.3
426,689 + Ac3H11_2196 0.29 +1.0
426,689 + Ac3H11_2196 0.29 -0.2
426,689 + Ac3H11_2196 0.29 +0.3
426,690 - Ac3H11_2196 0.29 +0.3
426,690 - Ac3H11_2196 0.29 +0.2
426,690 - Ac3H11_2196 0.29 -0.6
426,690 - Ac3H11_2196 0.29 -0.7
426,690 - Ac3H11_2196 0.29 +0.5
426,690 - Ac3H11_2196 0.29 -0.2
426,690 - Ac3H11_2196 0.29 -0.4
426,690 - Ac3H11_2196 0.29 -0.7
426,690 - Ac3H11_2196 0.29 -0.5
426,690 - Ac3H11_2196 0.29 -0.5
426,690 - Ac3H11_2196 0.29 +1.5
426,690 - Ac3H11_2196 0.29 +0.6
426,690 - Ac3H11_2196 0.29 +0.1
426,690 - Ac3H11_2196 0.29 -0.3
426,690 - Ac3H11_2196 0.29 +0.1
426,690 - Ac3H11_2196 0.29 +0.6
426,690 - Ac3H11_2196 0.29 +0.4
426,690 - Ac3H11_2196 0.29 -0.8
426,690 - Ac3H11_2196 0.29 -0.0
426,690 - Ac3H11_2196 0.29 +0.5
427,051 - -0.6
427,100 + Ac3H11_2197 0.11 +1.1
427,101 - Ac3H11_2197 0.11 +0.5
427,101 - Ac3H11_2197 0.11 +0.1
427,101 - Ac3H11_2197 0.11 +0.2
427,166 + Ac3H11_2197 0.37 -0.1
427,166 + Ac3H11_2197 0.37 +0.1
427,166 + Ac3H11_2197 0.37 -1.4
427,166 + Ac3H11_2197 0.37 -0.8
427,167 - Ac3H11_2197 0.37 +0.3
427,167 - Ac3H11_2197 0.37 +0.7
427,190 + Ac3H11_2197 0.46 +0.1
427,190 + Ac3H11_2197 0.46 +0.0
427,190 + Ac3H11_2197 0.46 -0.1
427,190 + Ac3H11_2197 0.46 -0.1
427,190 + Ac3H11_2197 0.46 -1.0
427,190 + Ac3H11_2197 0.46 -0.7
427,190 + Ac3H11_2197 0.46 -0.4
427,190 + Ac3H11_2197 0.46 -3.4
427,190 + Ac3H11_2197 0.46 -0.3
427,190 + Ac3H11_2197 0.46 +0.3
427,191 - Ac3H11_2197 0.47 -0.8
427,191 - Ac3H11_2197 0.47 -0.4
427,191 - Ac3H11_2197 0.47 -0.6
427,191 - Ac3H11_2197 0.47 -0.4
427,191 - Ac3H11_2197 0.47 -0.4
427,191 - Ac3H11_2197 0.47 -0.7
427,191 - Ac3H11_2197 0.47 -0.4
427,191 - Ac3H11_2197 0.47 -0.5
427,191 - Ac3H11_2197 0.47 -0.6
427,191 - Ac3H11_2197 0.47 +0.3
427,191 - Ac3H11_2197 0.47 +0.6
427,413 + +0.9
427,413 + +0.9
427,414 - +1.2
427,414 - -0.4
427,583 + Ac3H11_2198 0.18 -0.5
427,584 - Ac3H11_2198 0.18 +1.1

Or see this region's nucleotide sequence