Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2188

Experiment: Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2186 and Ac3H11_2187 are separated by 13 nucleotidesAc3H11_2187 and Ac3H11_2188 are separated by 25 nucleotidesAc3H11_2188 and Ac3H11_2189 are separated by 45 nucleotidesAc3H11_2189 and Ac3H11_2190 are separated by 171 nucleotides Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854 _2186 Ac3H11_2187 - DNA-binding response regulator, at 418,868 to 419,527 _2187 Ac3H11_2188 - Ni,Fe-hydrogenase I cytochrome b subunit, at 419,553 to 420,098 _2188 Ac3H11_2189 - hypothetical protein, at 420,144 to 420,401 _2189 Ac3H11_2190 - Permease of the drug/metabolite transporter (DMT) superfamily, at 420,573 to 421,487 _2190 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2at 418.653 kb on - strand, within Ac3H11_2186at 418.691 kb on - strand, within Ac3H11_2186at 418.981 kb on + strand, within Ac3H11_2187at 418.981 kb on + strand, within Ac3H11_2187at 418.981 kb on + strand, within Ac3H11_2187at 418.981 kb on + strand, within Ac3H11_2187at 418.981 kb on + strand, within Ac3H11_2187at 418.982 kb on - strand, within Ac3H11_2187at 418.982 kb on - strand, within Ac3H11_2187at 419.403 kb on + strand, within Ac3H11_2187at 419.403 kb on + strand, within Ac3H11_2187at 419.403 kb on + strand, within Ac3H11_2187at 419.950 kb on + strand, within Ac3H11_2188at 419.950 kb on + strand, within Ac3H11_2188at 419.951 kb on - strand, within Ac3H11_2188at 419.951 kb on - strand, within Ac3H11_2188at 420.115 kb on - strandat 420.145 kb on + strandat 420.146 kb on - strandat 420.146 kb on - strandat 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.184 kb on + strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.185 kb on - strand, within Ac3H11_2189at 420.221 kb on - strand, within Ac3H11_2189at 420.230 kb on - strand, within Ac3H11_2189at 420.268 kb on + strand, within Ac3H11_2189at 420.471 kb on + strandat 420.472 kb on - strandat 420.472 kb on - strandat 420.476 kb on + strandat 420.476 kb on + strandat 420.476 kb on + strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.477 kb on - strandat 420.752 kb on - strand, within Ac3H11_2190at 420.752 kb on - strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.778 kb on + strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.779 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.806 kb on - strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.817 kb on + strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 420.818 kb on - strand, within Ac3H11_2190at 421.042 kb on + strand, within Ac3H11_2190at 421.043 kb on - strand, within Ac3H11_2190

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0005 mg/ml
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418,653 - Ac3H11_2186 0.84 +1.3
418,691 - Ac3H11_2186 0.87 +1.6
418,981 + Ac3H11_2187 0.17 -0.2
418,981 + Ac3H11_2187 0.17 -0.5
418,981 + Ac3H11_2187 0.17 -0.4
418,981 + Ac3H11_2187 0.17 +0.1
418,981 + Ac3H11_2187 0.17 -0.8
418,982 - Ac3H11_2187 0.17 +0.6
418,982 - Ac3H11_2187 0.17 +0.5
419,403 + Ac3H11_2187 0.81 +0.0
419,403 + Ac3H11_2187 0.81 -0.6
419,403 + Ac3H11_2187 0.81 +0.1
419,950 + Ac3H11_2188 0.73 +0.7
419,950 + Ac3H11_2188 0.73 +0.1
419,951 - Ac3H11_2188 0.73 +0.3
419,951 - Ac3H11_2188 0.73 +0.1
420,115 - +0.1
420,145 + +0.1
420,146 - +1.5
420,146 - +0.6
420,184 + Ac3H11_2189 0.16 +0.1
420,184 + Ac3H11_2189 0.16 +0.7
420,184 + Ac3H11_2189 0.16 +0.6
420,184 + Ac3H11_2189 0.16 +0.3
420,184 + Ac3H11_2189 0.16 -0.3
420,185 - Ac3H11_2189 0.16 +1.0
420,185 - Ac3H11_2189 0.16 +1.4
420,185 - Ac3H11_2189 0.16 +1.5
420,185 - Ac3H11_2189 0.16 +1.6
420,185 - Ac3H11_2189 0.16 +2.1
420,185 - Ac3H11_2189 0.16 +1.5
420,185 - Ac3H11_2189 0.16 +1.7
420,185 - Ac3H11_2189 0.16 +1.4
420,185 - Ac3H11_2189 0.16 +1.8
420,221 - Ac3H11_2189 0.30 +1.0
420,230 - Ac3H11_2189 0.33 +1.7
420,268 + Ac3H11_2189 0.48 +0.2
420,471 + +0.4
420,472 - +1.9
420,472 - +1.8
420,476 + +0.4
420,476 + +0.1
420,476 + +0.5
420,477 - +2.0
420,477 - +1.2
420,477 - +1.7
420,477 - +1.8
420,477 - +1.8
420,477 - +1.9
420,477 - +1.7
420,477 - +2.0
420,477 - +1.8
420,477 - +1.9
420,477 - +1.9
420,477 - +1.9
420,477 - +1.8
420,477 - +1.5
420,477 - +1.9
420,752 - Ac3H11_2190 0.20 +0.1
420,752 - Ac3H11_2190 0.20 +0.4
420,778 + Ac3H11_2190 0.22 -0.1
420,778 + Ac3H11_2190 0.22 -0.7
420,778 + Ac3H11_2190 0.22 +0.2
420,778 + Ac3H11_2190 0.22 +0.2
420,778 + Ac3H11_2190 0.22 +0.6
420,779 - Ac3H11_2190 0.23 +0.5
420,779 - Ac3H11_2190 0.23 +0.7
420,779 - Ac3H11_2190 0.23 +0.4
420,779 - Ac3H11_2190 0.23 -0.1
420,779 - Ac3H11_2190 0.23 +0.3
420,779 - Ac3H11_2190 0.23 +0.4
420,779 - Ac3H11_2190 0.23 +0.3
420,779 - Ac3H11_2190 0.23 +0.7
420,806 - Ac3H11_2190 0.25 -0.3
420,806 - Ac3H11_2190 0.25 +0.3
420,806 - Ac3H11_2190 0.25 +0.2
420,806 - Ac3H11_2190 0.25 -0.0
420,817 + Ac3H11_2190 0.27 +0.0
420,817 + Ac3H11_2190 0.27 -0.4
420,817 + Ac3H11_2190 0.27 -0.0
420,817 + Ac3H11_2190 0.27 +0.4
420,817 + Ac3H11_2190 0.27 -0.7
420,818 - Ac3H11_2190 0.27 +0.2
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 +1.4
420,818 - Ac3H11_2190 0.27 +0.3
420,818 - Ac3H11_2190 0.27 +0.4
420,818 - Ac3H11_2190 0.27 +0.4
420,818 - Ac3H11_2190 0.27 +0.3
420,818 - Ac3H11_2190 0.27 +0.3
420,818 - Ac3H11_2190 0.27 +0.1
420,818 - Ac3H11_2190 0.27 +0.5
420,818 - Ac3H11_2190 0.27 +0.4
420,818 - Ac3H11_2190 0.27 +0.2
421,042 + Ac3H11_2190 0.51 -2.2
421,043 - Ac3H11_2190 0.51 +0.0

Or see this region's nucleotide sequence