Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18685

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nt AZOBR_RS18685: AZOBR_RS18685 - L-aspartate oxidase, at 962,384 to 963,793 _RS18685 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1at 961.457 kb on + strandat 961.457 kb on + strandat 961.457 kb on + strandat 961.457 kb on + strandat 961.458 kb on - strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.566 kb on + strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 961.567 kb on - strandat 962.380 kb on + strandat 962.380 kb on + strandat 962.380 kb on + strandat 962.381 kb on - strandat 962.994 kb on + strand, within AZOBR_RS18685at 962.995 kb on - strand, within AZOBR_RS18685at 963.409 kb on - strand, within AZOBR_RS18685at 964.776 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
961,457 + -0.0
961,457 + -0.3
961,457 + -0.1
961,457 + +1.0
961,458 - -0.9
961,566 + -0.3
961,566 + +0.8
961,566 + +0.1
961,566 + +0.2
961,566 + +0.0
961,566 + -2.0
961,566 + +0.2
961,566 + -0.5
961,567 - +0.1
961,567 - +0.3
961,567 - -0.5
961,567 - +0.0
961,567 - +0.3
961,567 - +1.0
962,380 + -0.4
962,380 + +0.8
962,380 + -1.2
962,381 - -0.9
962,994 + AZOBR_RS18685 0.43 -0.8
962,995 - AZOBR_RS18685 0.43 -0.2
963,409 - AZOBR_RS18685 0.73 -0.4
964,776 - -1.2

Or see this region's nucleotide sequence