Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25870

Experiment: Polymyxin B sulfate 4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25860 and AO353_25865 are separated by 104 nucleotidesAO353_25865 and AO353_25870 are separated by 2 nucleotidesAO353_25870 and AO353_25875 are separated by 102 nucleotides AO353_25860: AO353_25860 - peptide ABC transporter, at 5,702,157 to 5,703,098 _25860 AO353_25865: AO353_25865 - peptide ABC transporter permease, at 5,703,203 to 5,703,955 _25865 AO353_25870: AO353_25870 - peptide ABC transporter ATP-binding protein, at 5,703,958 to 5,705,607 _25870 AO353_25875: AO353_25875 - porin, at 5,705,710 to 5,706,984 _25875 Position (kb) 5703 5704 5705 5706Strain fitness (log2 ratio) -2 -1 0 1 2at 5702.976 kb on - strand, within AO353_25860at 5702.979 kb on + strand, within AO353_25860at 5702.979 kb on + strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5703.017 kb on - strandat 5703.033 kb on + strandat 5703.033 kb on + strandat 5703.034 kb on - strandat 5703.034 kb on - strandat 5703.034 kb on - strandat 5703.066 kb on + strandat 5703.094 kb on + strandat 5703.094 kb on + strandat 5703.095 kb on - strandat 5703.125 kb on - strandat 5703.233 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.426 kb on - strand, within AO353_25865at 5703.536 kb on + strand, within AO353_25865at 5703.566 kb on + strand, within AO353_25865at 5703.566 kb on + strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.665 kb on + strandat 5703.665 kb on + strand, within AO353_25865at 5703.675 kb on - strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.833 kb on + strand, within AO353_25865at 5703.833 kb on + strand, within AO353_25865at 5703.834 kb on - strand, within AO353_25865at 5703.834 kb on - strand, within AO353_25865at 5704.412 kb on - strand, within AO353_25870at 5704.708 kb on + strand, within AO353_25870at 5704.709 kb on - strand, within AO353_25870at 5704.709 kb on - strand, within AO353_25870at 5705.062 kb on + strand, within AO353_25870at 5705.158 kb on - strand, within AO353_25870at 5705.454 kb on + strandat 5705.506 kb on + strandat 5705.507 kb on - strandat 5705.507 kb on - strandat 5705.519 kb on + strandat 5705.605 kb on + strandat 5705.605 kb on + strandat 5705.605 kb on + strandat 5705.606 kb on - strandat 5705.606 kb on - strandat 5705.827 kb on + strandat 5705.827 kb on + strandat 5705.828 kb on - strandat 5705.828 kb on - strandat 5705.828 kb on - strandat 5705.853 kb on + strand, within AO353_25875at 5705.853 kb on + strand, within AO353_25875at 5705.854 kb on - strand, within AO353_25875at 5705.854 kb on - strand, within AO353_25875at 5705.854 kb on - strandat 5706.070 kb on + strand, within AO353_25875at 5706.070 kb on + strand, within AO353_25875at 5706.070 kb on + strand, within AO353_25875at 5706.070 kb on + strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.071 kb on - strand, within AO353_25875at 5706.080 kb on + strand, within AO353_25875at 5706.080 kb on + strand, within AO353_25875at 5706.080 kb on + strand, within AO353_25875at 5706.319 kb on + strand, within AO353_25875at 5706.319 kb on + strand, within AO353_25875at 5706.319 kb on + strand, within AO353_25875at 5706.319 kb on + strand, within AO353_25875at 5706.320 kb on - strand, within AO353_25875at 5706.320 kb on - strand, within AO353_25875at 5706.393 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.397 kb on + strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.398 kb on - strand, within AO353_25875at 5706.400 kb on + strand, within AO353_25875at 5706.400 kb on + strand, within AO353_25875at 5706.401 kb on - strand, within AO353_25875at 5706.401 kb on - strand, within AO353_25875at 5706.401 kb on - strand, within AO353_25875at 5706.401 kb on - strand, within AO353_25875at 5706.401 kb on - strand, within AO353_25875at 5706.404 kb on - strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strandat 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.422 kb on + strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strandat 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strandat 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.423 kb on - strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.424 kb on + strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.425 kb on - strand, within AO353_25875at 5706.436 kb on + strand, within AO353_25875at 5706.436 kb on + strand, within AO353_25875at 5706.436 kb on + strand, within AO353_25875at 5706.437 kb on - strand, within AO353_25875at 5706.437 kb on - strand, within AO353_25875at 5706.437 kb on - strand, within AO353_25875at 5706.437 kb on - strand, within AO353_25875at 5706.474 kb on + strand, within AO353_25875at 5706.497 kb on - strand, within AO353_25875at 5706.497 kb on - strand, within AO353_25875at 5706.571 kb on + strand, within AO353_25875at 5706.571 kb on + strand, within AO353_25875at 5706.571 kb on + strand, within AO353_25875at 5706.571 kb on + strand, within AO353_25875at 5706.572 kb on - strand, within AO353_25875at 5706.572 kb on - strand, within AO353_25875at 5706.572 kb on - strand, within AO353_25875at 5706.572 kb on - strand, within AO353_25875at 5706.572 kb on - strand, within AO353_25875

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml
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5,702,976 - AO353_25860 0.87 +1.5
5,702,979 + AO353_25860 0.87 -0.1
5,702,979 + AO353_25860 0.87 -0.5
5,702,980 - AO353_25860 0.87 -2.2
5,702,980 - AO353_25860 0.87 -1.1
5,702,980 - AO353_25860 0.87 -0.1
5,703,017 - +0.5
5,703,033 + +1.1
5,703,033 + +1.8
5,703,034 - +1.3
5,703,034 - +0.3
5,703,034 - +0.3
5,703,066 + -0.7
5,703,094 + +0.5
5,703,094 + +1.4
5,703,095 - -0.9
5,703,125 - +0.8
5,703,233 + -0.7
5,703,255 + -0.7
5,703,255 + -1.9
5,703,255 + +0.4
5,703,255 + -0.1
5,703,255 + -1.7
5,703,256 - -0.9
5,703,256 - -0.7
5,703,256 - +0.4
5,703,256 - +1.7
5,703,256 - -0.2
5,703,256 - +0.2
5,703,256 - -0.2
5,703,256 - -1.7
5,703,426 - AO353_25865 0.30 -0.9
5,703,536 + AO353_25865 0.44 -0.7
5,703,566 + AO353_25865 0.48 +1.1
5,703,566 + AO353_25865 0.48 -2.2
5,703,569 - AO353_25865 0.49 -0.5
5,703,569 - AO353_25865 0.49 -1.0
5,703,569 - AO353_25865 0.49 +0.1
5,703,665 + +2.1
5,703,665 + AO353_25865 0.61 -0.8
5,703,675 - AO353_25865 0.63 +0.3
5,703,811 + AO353_25865 0.81 -0.9
5,703,811 + AO353_25865 0.81 -0.5
5,703,811 + AO353_25865 0.81 -0.5
5,703,811 + AO353_25865 0.81 +0.2
5,703,812 - AO353_25865 0.81 +0.6
5,703,812 - AO353_25865 0.81 -2.1
5,703,812 - AO353_25865 0.81 -0.2
5,703,833 + AO353_25865 0.84 +0.1
5,703,833 + AO353_25865 0.84 -0.6
5,703,834 - AO353_25865 0.84 -0.4
5,703,834 - AO353_25865 0.84 +0.1
5,704,412 - AO353_25870 0.28 -0.4
5,704,708 + AO353_25870 0.45 -1.0
5,704,709 - AO353_25870 0.46 +0.8
5,704,709 - AO353_25870 0.46 +0.1
5,705,062 + AO353_25870 0.67 -1.2
5,705,158 - AO353_25870 0.73 -1.2
5,705,454 + -1.8
5,705,506 + -0.6
5,705,507 - -1.6
5,705,507 - -0.2
5,705,519 + -1.4
5,705,605 + +0.5
5,705,605 + -1.2
5,705,605 + -0.2
5,705,606 - -0.1
5,705,606 - -1.7
5,705,827 + +0.2
5,705,827 + -0.1
5,705,828 - -0.4
5,705,828 - -0.6
5,705,828 - -0.0
5,705,853 + AO353_25875 0.11 -0.0
5,705,853 + AO353_25875 0.11 -1.2
5,705,854 - AO353_25875 0.11 -1.2
5,705,854 - AO353_25875 0.11 +0.2
5,705,854 - +0.5
5,706,070 + AO353_25875 0.28 +0.6
5,706,070 + AO353_25875 0.28 +0.7
5,706,070 + AO353_25875 0.28 +0.1
5,706,070 + AO353_25875 0.28 -0.3
5,706,071 - AO353_25875 0.28 +2.3
5,706,071 - AO353_25875 0.28 +0.3
5,706,071 - AO353_25875 0.28 -1.5
5,706,071 - AO353_25875 0.28 -0.1
5,706,071 - AO353_25875 0.28 +0.3
5,706,071 - AO353_25875 0.28 -0.5
5,706,071 - AO353_25875 0.28 +0.8
5,706,071 - AO353_25875 0.28 -1.8
5,706,071 - AO353_25875 0.28 +0.8
5,706,080 + AO353_25875 0.29 -0.1
5,706,080 + AO353_25875 0.29 -0.7
5,706,080 + AO353_25875 0.29 -0.6
5,706,319 + AO353_25875 0.48 -1.2
5,706,319 + AO353_25875 0.48 -2.5
5,706,319 + AO353_25875 0.48 -1.0
5,706,319 + AO353_25875 0.48 +0.3
5,706,320 - AO353_25875 0.48 -1.8
5,706,320 - AO353_25875 0.48 +0.3
5,706,393 + AO353_25875 0.54 -1.2
5,706,397 + AO353_25875 0.54 -0.6
5,706,397 + AO353_25875 0.54 -0.2
5,706,397 + AO353_25875 0.54 +1.3
5,706,397 + AO353_25875 0.54 -0.9
5,706,397 + AO353_25875 0.54 +0.1
5,706,397 + AO353_25875 0.54 -0.7
5,706,397 + AO353_25875 0.54 -0.5
5,706,398 - AO353_25875 0.54 -0.0
5,706,398 - AO353_25875 0.54 +0.5
5,706,398 - AO353_25875 0.54 +0.2
5,706,398 - AO353_25875 0.54 +0.3
5,706,398 - AO353_25875 0.54 +0.8
5,706,398 - AO353_25875 0.54 -0.1
5,706,398 - AO353_25875 0.54 -0.8
5,706,400 + AO353_25875 0.54 -0.3
5,706,400 + AO353_25875 0.54 -0.8
5,706,401 - AO353_25875 0.54 +0.7
5,706,401 - AO353_25875 0.54 +0.3
5,706,401 - AO353_25875 0.54 +0.3
5,706,401 - AO353_25875 0.54 +0.2
5,706,401 - AO353_25875 0.54 -0.5
5,706,404 - AO353_25875 0.54 -1.7
5,706,422 + AO353_25875 0.56 +0.1
5,706,422 + AO353_25875 0.56 +0.1
5,706,422 + AO353_25875 0.56 +0.6
5,706,422 + AO353_25875 0.56 +0.1
5,706,422 + AO353_25875 0.56 +0.1
5,706,422 + AO353_25875 0.56 -0.3
5,706,422 + AO353_25875 0.56 -0.9
5,706,422 + AO353_25875 0.56 -0.9
5,706,422 + AO353_25875 0.56 +0.4
5,706,422 + AO353_25875 0.56 -0.6
5,706,422 + AO353_25875 0.56 +0.9
5,706,422 + AO353_25875 0.56 -0.9
5,706,422 + AO353_25875 0.56 +0.5
5,706,422 + -1.7
5,706,422 + AO353_25875 0.56 -0.9
5,706,422 + AO353_25875 0.56 +0.1
5,706,422 + AO353_25875 0.56 +0.7
5,706,423 - AO353_25875 0.56 +0.5
5,706,423 - AO353_25875 0.56 +0.3
5,706,423 - AO353_25875 0.56 -2.1
5,706,423 - AO353_25875 0.56 -1.7
5,706,423 - AO353_25875 0.56 +0.8
5,706,423 - AO353_25875 0.56 -1.5
5,706,423 - +0.1
5,706,423 - AO353_25875 0.56 +0.5
5,706,423 - AO353_25875 0.56 -0.8
5,706,423 - AO353_25875 0.56 -0.2
5,706,423 - +2.7
5,706,423 - AO353_25875 0.56 -0.5
5,706,423 - AO353_25875 0.56 -0.1
5,706,423 - AO353_25875 0.56 -0.1
5,706,423 - AO353_25875 0.56 -0.9
5,706,423 - AO353_25875 0.56 +0.3
5,706,423 - AO353_25875 0.56 +0.6
5,706,423 - AO353_25875 0.56 -1.7
5,706,424 + AO353_25875 0.56 +0.9
5,706,424 + AO353_25875 0.56 +0.8
5,706,424 + AO353_25875 0.56 +1.4
5,706,424 + AO353_25875 0.56 +0.8
5,706,424 + AO353_25875 0.56 +1.9
5,706,424 + AO353_25875 0.56 -0.1
5,706,425 - AO353_25875 0.56 +0.2
5,706,425 - AO353_25875 0.56 -0.2
5,706,425 - AO353_25875 0.56 -0.2
5,706,425 - AO353_25875 0.56 +0.3
5,706,425 - AO353_25875 0.56 -0.2
5,706,425 - AO353_25875 0.56 -0.3
5,706,425 - AO353_25875 0.56 -0.1
5,706,425 - AO353_25875 0.56 -1.2
5,706,425 - AO353_25875 0.56 +0.1
5,706,425 - AO353_25875 0.56 +1.5
5,706,425 - AO353_25875 0.56 -1.0
5,706,436 + AO353_25875 0.57 +0.9
5,706,436 + AO353_25875 0.57 +0.1
5,706,436 + AO353_25875 0.57 -0.8
5,706,437 - AO353_25875 0.57 +0.2
5,706,437 - AO353_25875 0.57 -0.7
5,706,437 - AO353_25875 0.57 +0.5
5,706,437 - AO353_25875 0.57 +0.7
5,706,474 + AO353_25875 0.60 -1.2
5,706,497 - AO353_25875 0.62 -0.5
5,706,497 - AO353_25875 0.62 +0.1
5,706,571 + AO353_25875 0.68 +0.8
5,706,571 + AO353_25875 0.68 -0.0
5,706,571 + AO353_25875 0.68 +0.2
5,706,571 + AO353_25875 0.68 +0.7
5,706,572 - AO353_25875 0.68 -0.9
5,706,572 - AO353_25875 0.68 -0.8
5,706,572 - AO353_25875 0.68 +0.1
5,706,572 - AO353_25875 0.68 -1.1
5,706,572 - AO353_25875 0.68 -0.2

Or see this region's nucleotide sequence