Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16480

Experiment: Polymyxin B sulfate 4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_16470 and AO353_16475 overlap by 4 nucleotidesAO353_16475 and AO353_16480 are separated by 17 nucleotidesAO353_16480 and AO353_16485 overlap by 1 nucleotidesAO353_16485 and AO353_16490 overlap by 4 nucleotides AO353_16470: AO353_16470 - uridylate kinase, at 3,657,780 to 3,658,523 _16470 AO353_16475: AO353_16475 - ribosome-recycling factor, at 3,658,520 to 3,659,077 _16475 AO353_16480: AO353_16480 - farnesyl-diphosphate synthase, at 3,659,095 to 3,659,850 _16480 AO353_16485: AO353_16485 - phosphatidate cytidylyltransferase, at 3,659,850 to 3,660,656 _16485 AO353_16490: AO353_16490 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,660,653 to 3,661,843 _16490 Position (kb) 3659 3660Strain fitness (log2 ratio) -1 0 1 2at 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.073 kb on + strandat 3659.075 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml
remove
3,659,073 + +0.3
3,659,073 + -1.5
3,659,073 + +0.5
3,659,073 + +0.3
3,659,073 + -0.6
3,659,073 + +1.9
3,659,073 + +0.1
3,659,073 + -0.2
3,659,073 + +0.0
3,659,073 + +1.0
3,659,073 + +1.2
3,659,073 + +0.4
3,659,073 + -0.2
3,659,075 + +0.3

Or see this region's nucleotide sequence