Experiment: Polymyxin B sulfate 4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09555 and AO353_09560 are separated by 15 nucleotides AO353_09560 and AO353_09565 are separated by 72 nucleotides
AO353_09555: AO353_09555 - type VI secretion protein, at 2,097,449 to 2,098,783
_09555
AO353_09560: AO353_09560 - type VI secretion protein, at 2,098,799 to 2,099,311
_09560
AO353_09565: AO353_09565 - type VI secretion protein, at 2,099,384 to 2,100,805
_09565
Position (kb)
2098
2099
2100 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2097.838 kb on + strand, within AO353_09555 at 2097.838 kb on + strand, within AO353_09555 at 2097.838 kb on + strand, within AO353_09555 at 2097.839 kb on - strand, within AO353_09555 at 2097.839 kb on - strand, within AO353_09555 at 2097.839 kb on - strand, within AO353_09555 at 2097.996 kb on + strand, within AO353_09555 at 2097.997 kb on - strand, within AO353_09555 at 2097.997 kb on - strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.205 kb on + strand, within AO353_09555 at 2098.206 kb on - strand, within AO353_09555 at 2098.206 kb on - strand, within AO353_09555 at 2098.206 kb on - strand, within AO353_09555 at 2098.206 kb on - strand, within AO353_09555 at 2098.206 kb on - strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.227 kb on + strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.228 kb on - strand, within AO353_09555 at 2098.296 kb on + strand, within AO353_09555 at 2098.391 kb on + strand, within AO353_09555 at 2098.413 kb on + strand, within AO353_09555 at 2098.413 kb on + strand, within AO353_09555 at 2098.413 kb on + strand, within AO353_09555 at 2098.414 kb on - strand, within AO353_09555 at 2098.488 kb on + strand, within AO353_09555 at 2098.488 kb on + strand, within AO353_09555 at 2098.489 kb on - strand, within AO353_09555 at 2098.801 kb on - strand at 2098.869 kb on + strand, within AO353_09560 at 2098.870 kb on - strand, within AO353_09560 at 2098.878 kb on + strand, within AO353_09560 at 2099.080 kb on - strand, within AO353_09560 at 2099.295 kb on - strand at 2099.337 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.359 kb on + strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.360 kb on - strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.363 kb on + strand at 2099.364 kb on - strand at 2099.364 kb on - strand at 2099.364 kb on - strand at 2099.364 kb on - strand at 2099.364 kb on - strand at 2099.364 kb on - strand at 2099.371 kb on + strand at 2099.372 kb on - strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.404 kb on + strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.405 kb on - strand at 2099.418 kb on + strand at 2099.419 kb on - strand at 2099.487 kb on + strand at 2099.487 kb on + strand at 2099.487 kb on + strand at 2099.488 kb on - strand at 2099.488 kb on - strand at 2099.671 kb on + strand, within AO353_09565 at 2099.672 kb on - strand, within AO353_09565 at 2099.825 kb on - strand, within AO353_09565 at 2099.872 kb on - strand, within AO353_09565 at 2100.200 kb on + strand, within AO353_09565 at 2100.201 kb on - strand, within AO353_09565
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml remove 2,097,838 + AO353_09555 0.29 +0.9 2,097,838 + AO353_09555 0.29 -0.8 2,097,838 + AO353_09555 0.29 +1.0 2,097,839 - AO353_09555 0.29 -1.9 2,097,839 - AO353_09555 0.29 +1.0 2,097,839 - AO353_09555 0.29 -0.0 2,097,996 + AO353_09555 0.41 +1.7 2,097,997 - AO353_09555 0.41 +0.1 2,097,997 - AO353_09555 0.41 -0.1 2,098,205 + AO353_09555 0.57 +0.4 2,098,205 + AO353_09555 0.57 +0.8 2,098,205 + AO353_09555 0.57 +1.1 2,098,205 + AO353_09555 0.57 +0.2 2,098,205 + AO353_09555 0.57 +0.4 2,098,205 + AO353_09555 0.57 -1.1 2,098,205 + AO353_09555 0.57 +1.9 2,098,205 + AO353_09555 0.57 +0.5 2,098,205 + AO353_09555 0.57 -1.9 2,098,205 + AO353_09555 0.57 +0.7 2,098,206 - AO353_09555 0.57 +0.2 2,098,206 - AO353_09555 0.57 +0.7 2,098,206 - AO353_09555 0.57 +0.9 2,098,206 - AO353_09555 0.57 -0.0 2,098,206 - AO353_09555 0.57 +1.0 2,098,227 + AO353_09555 0.58 +0.7 2,098,227 + AO353_09555 0.58 -0.2 2,098,227 + AO353_09555 0.58 -0.2 2,098,227 + AO353_09555 0.58 +0.4 2,098,227 + AO353_09555 0.58 +1.1 2,098,227 + AO353_09555 0.58 -2.2 2,098,227 + AO353_09555 0.58 +0.3 2,098,227 + AO353_09555 0.58 +0.8 2,098,227 + AO353_09555 0.58 +2.6 2,098,227 + AO353_09555 0.58 +0.9 2,098,227 + AO353_09555 0.58 +0.2 2,098,227 + AO353_09555 0.58 -1.0 2,098,227 + AO353_09555 0.58 +0.3 2,098,227 + AO353_09555 0.58 +1.5 2,098,227 + AO353_09555 0.58 -0.3 2,098,227 + AO353_09555 0.58 -0.1 2,098,227 + AO353_09555 0.58 +0.5 2,098,227 + AO353_09555 0.58 +1.6 2,098,227 + AO353_09555 0.58 +1.6 2,098,227 + AO353_09555 0.58 +1.0 2,098,227 + AO353_09555 0.58 -0.3 2,098,227 + AO353_09555 0.58 +0.4 2,098,227 + AO353_09555 0.58 +1.0 2,098,228 - AO353_09555 0.58 +0.8 2,098,228 - AO353_09555 0.58 +0.8 2,098,228 - AO353_09555 0.58 -0.3 2,098,228 - AO353_09555 0.58 -0.5 2,098,228 - AO353_09555 0.58 -0.4 2,098,228 - AO353_09555 0.58 +0.3 2,098,228 - AO353_09555 0.58 -1.0 2,098,228 - AO353_09555 0.58 -0.3 2,098,228 - AO353_09555 0.58 +0.7 2,098,228 - AO353_09555 0.58 +0.5 2,098,228 - AO353_09555 0.58 -1.2 2,098,228 - AO353_09555 0.58 +1.3 2,098,228 - AO353_09555 0.58 +1.2 2,098,228 - AO353_09555 0.58 +0.3 2,098,228 - AO353_09555 0.58 -0.5 2,098,228 - AO353_09555 0.58 -0.4 2,098,228 - AO353_09555 0.58 -2.0 2,098,228 - AO353_09555 0.58 -0.3 2,098,228 - AO353_09555 0.58 -0.8 2,098,228 - AO353_09555 0.58 -0.3 2,098,228 - AO353_09555 0.58 +1.2 2,098,228 - AO353_09555 0.58 +0.5 2,098,228 - AO353_09555 0.58 -0.3 2,098,228 - AO353_09555 0.58 +1.0 2,098,228 - AO353_09555 0.58 +2.0 2,098,228 - AO353_09555 0.58 +0.2 2,098,228 - AO353_09555 0.58 +0.3 2,098,228 - AO353_09555 0.58 +1.2 2,098,228 - AO353_09555 0.58 +0.4 2,098,228 - AO353_09555 0.58 +1.0 2,098,228 - AO353_09555 0.58 +0.2 2,098,228 - AO353_09555 0.58 +0.2 2,098,228 - AO353_09555 0.58 +0.8 2,098,296 + AO353_09555 0.63 +0.5 2,098,391 + AO353_09555 0.71 +0.8 2,098,413 + AO353_09555 0.72 +0.0 2,098,413 + AO353_09555 0.72 +0.5 2,098,413 + AO353_09555 0.72 +0.5 2,098,414 - AO353_09555 0.72 +0.3 2,098,488 + AO353_09555 0.78 +0.4 2,098,488 + AO353_09555 0.78 -0.1 2,098,489 - AO353_09555 0.78 +0.2 2,098,801 - -0.5 2,098,869 + AO353_09560 0.14 +0.7 2,098,870 - AO353_09560 0.14 +0.5 2,098,878 + AO353_09560 0.15 +0.5 2,099,080 - AO353_09560 0.55 +0.0 2,099,295 - +1.3 2,099,337 + +1.0 2,099,359 + -0.1 2,099,359 + +0.8 2,099,359 + +0.8 2,099,359 + +0.9 2,099,359 + +0.1 2,099,359 + +1.4 2,099,359 + +1.8 2,099,359 + -0.2 2,099,359 + +0.5 2,099,359 + +1.6 2,099,359 + +2.4 2,099,359 + +2.0 2,099,359 + +1.0 2,099,360 - +0.3 2,099,360 - -1.5 2,099,360 - -1.8 2,099,360 - -0.3 2,099,360 - -1.9 2,099,360 - +0.5 2,099,360 - +0.0 2,099,360 - -0.4 2,099,360 - -1.4 2,099,360 - -0.6 2,099,360 - -0.6 2,099,360 - -2.0 2,099,360 - -0.3 2,099,360 - -0.5 2,099,360 - -0.7 2,099,360 - -0.5 2,099,360 - -0.2 2,099,360 - +0.0 2,099,360 - +0.0 2,099,360 - -0.3 2,099,363 + +0.6 2,099,363 + +0.7 2,099,363 + +1.0 2,099,363 + +1.1 2,099,363 + +0.6 2,099,363 + +0.8 2,099,363 + -0.3 2,099,363 + +0.2 2,099,363 + +0.2 2,099,364 - -2.0 2,099,364 - -1.4 2,099,364 - -1.2 2,099,364 - -0.1 2,099,364 - -1.3 2,099,364 - +0.4 2,099,371 + +0.3 2,099,372 - -0.8 2,099,404 + +1.0 2,099,404 + +0.5 2,099,404 + -0.7 2,099,404 + +1.2 2,099,404 + +1.2 2,099,404 + +0.7 2,099,404 + +0.3 2,099,404 + -0.4 2,099,404 + +0.6 2,099,404 + -1.1 2,099,404 + -0.4 2,099,405 - +1.0 2,099,405 - -3.1 2,099,405 - -0.1 2,099,405 - -1.8 2,099,405 - -0.2 2,099,405 - -0.3 2,099,405 - -2.4 2,099,405 - -0.1 2,099,405 - -0.5 2,099,405 - +1.5 2,099,405 - -1.8 2,099,405 - +0.8 2,099,405 - +0.5 2,099,418 + +0.5 2,099,419 - -1.5 2,099,487 + -0.5 2,099,487 + +1.0 2,099,487 + -0.8 2,099,488 - +0.7 2,099,488 - +0.7 2,099,671 + AO353_09565 0.20 +1.0 2,099,672 - AO353_09565 0.20 -0.0 2,099,825 - AO353_09565 0.31 -0.5 2,099,872 - AO353_09565 0.34 +0.8 2,100,200 + AO353_09565 0.57 -0.8 2,100,201 - AO353_09565 0.57 +1.2
Or see this region's nucleotide sequence