Experiment: Polymyxin B sulfate 4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04215 and AO353_04220 are separated by 42 nucleotides AO353_04220 and AO353_04225 overlap by 4 nucleotides
AO353_04215: AO353_04215 - diguanylate cyclase, at 904,944 to 905,945
_04215
AO353_04220: AO353_04220 - chemotaxis protein CheY, at 905,988 to 906,998
_04220
AO353_04225: AO353_04225 - chemotaxis protein CheA, at 906,995 to 909,289
_04225
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 904.988 kb on - strand at 905.024 kb on - strand at 905.095 kb on - strand, within AO353_04215 at 905.171 kb on + strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.172 kb on - strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.308 kb on + strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.309 kb on - strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.320 kb on + strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.321 kb on - strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.392 kb on + strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.393 kb on - strand, within AO353_04215 at 905.414 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.536 kb on + strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.537 kb on - strand, within AO353_04215 at 905.599 kb on + strand, within AO353_04215 at 905.919 kb on - strand at 905.919 kb on - strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.934 kb on + strand at 905.935 kb on - strand at 905.935 kb on - strand at 905.962 kb on - strand at 905.970 kb on + strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 905.971 kb on - strand at 906.045 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.085 kb on + strand at 906.086 kb on - strand at 906.086 kb on - strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.087 kb on + strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.088 kb on - strand at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.124 kb on + strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.125 kb on - strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.146 kb on + strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.147 kb on - strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.211 kb on + strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.212 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.254 kb on - strand, within AO353_04220 at 906.281 kb on - strand, within AO353_04220 at 906.290 kb on + strand, within AO353_04220 at 906.303 kb on + strand, within AO353_04220 at 907.013 kb on + strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.014 kb on - strand at 907.067 kb on + strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.068 kb on - strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.071 kb on + strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.072 kb on - strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.074 kb on + strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.075 kb on - strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.125 kb on + strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.126 kb on - strand at 907.210 kb on + strand at 907.211 kb on - strand at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.363 kb on + strand, within AO353_04225 at 907.364 kb on - strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.599 kb on + strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.600 kb on - strand, within AO353_04225 at 907.634 kb on - strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.800 kb on + strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.801 kb on - strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225 at 907.952 kb on + strand, within AO353_04225
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml remove 904,988 - +1.6 904,988 - +0.3 904,988 - -0.9 904,988 - -1.5 905,024 - -0.1 905,095 - AO353_04215 0.15 +0.5 905,171 + AO353_04215 0.23 +0.9 905,172 - AO353_04215 0.23 +1.6 905,172 - AO353_04215 0.23 -0.2 905,172 - AO353_04215 0.23 +0.4 905,308 + AO353_04215 0.36 -0.9 905,308 + AO353_04215 0.36 +0.1 905,308 + AO353_04215 0.36 -0.7 905,308 + AO353_04215 0.36 +0.1 905,308 + AO353_04215 0.36 +1.1 905,309 - AO353_04215 0.36 +1.3 905,309 - AO353_04215 0.36 +0.7 905,309 - AO353_04215 0.36 +0.5 905,309 - AO353_04215 0.36 +0.7 905,309 - AO353_04215 0.36 +0.1 905,320 + AO353_04215 0.38 +1.1 905,320 + AO353_04215 0.38 -1.4 905,321 - AO353_04215 0.38 -1.4 905,321 - AO353_04215 0.38 -0.4 905,392 + AO353_04215 0.45 -0.1 905,392 + AO353_04215 0.45 +0.2 905,392 + AO353_04215 0.45 +0.1 905,393 - AO353_04215 0.45 +1.1 905,393 - AO353_04215 0.45 +0.5 905,393 - AO353_04215 0.45 +0.3 905,393 - AO353_04215 0.45 -1.4 905,393 - AO353_04215 0.45 -0.3 905,414 + AO353_04215 0.47 -1.8 905,536 + AO353_04215 0.59 +1.1 905,536 + AO353_04215 0.59 +1.1 905,536 + AO353_04215 0.59 -0.1 905,536 + AO353_04215 0.59 +0.9 905,536 + AO353_04215 0.59 +0.9 905,536 + AO353_04215 0.59 -0.5 905,536 + AO353_04215 0.59 +0.2 905,536 + AO353_04215 0.59 -1.1 905,536 + AO353_04215 0.59 -0.9 905,536 + AO353_04215 0.59 +0.1 905,536 + AO353_04215 0.59 +1.1 905,536 + AO353_04215 0.59 +0.8 905,537 - AO353_04215 0.59 -0.7 905,537 - AO353_04215 0.59 -0.8 905,537 - AO353_04215 0.59 +0.6 905,537 - AO353_04215 0.59 -0.2 905,537 - AO353_04215 0.59 -0.2 905,537 - AO353_04215 0.59 -0.3 905,537 - AO353_04215 0.59 +0.6 905,537 - AO353_04215 0.59 +0.1 905,599 + AO353_04215 0.65 +0.6 905,919 - -0.8 905,919 - +0.5 905,934 + +0.4 905,934 + +0.6 905,934 + -1.3 905,934 + +0.3 905,935 - -0.9 905,935 - +0.6 905,962 - -2.3 905,970 + -0.8 905,971 - -2.1 905,971 - -0.2 905,971 - +0.2 905,971 - +0.1 906,045 + +0.4 906,085 + -0.7 906,085 + +0.3 906,085 + -0.4 906,085 + +0.3 906,086 - -1.4 906,086 - -1.1 906,087 + +0.9 906,087 + +0.6 906,087 + +1.2 906,087 + +0.1 906,087 + -1.5 906,088 - -0.2 906,088 - +0.1 906,088 - -0.4 906,088 - -0.4 906,088 - -0.4 906,088 - +0.4 906,088 - -2.2 906,124 + AO353_04220 0.13 +0.1 906,124 + AO353_04220 0.13 -1.5 906,124 + AO353_04220 0.13 +0.5 906,124 + AO353_04220 0.13 -1.5 906,124 + AO353_04220 0.13 +0.6 906,125 - AO353_04220 0.14 -0.4 906,125 - AO353_04220 0.14 -0.9 906,125 - AO353_04220 0.14 -0.8 906,125 - AO353_04220 0.14 -1.5 906,146 + AO353_04220 0.16 +1.6 906,146 + AO353_04220 0.16 +0.2 906,146 + AO353_04220 0.16 -0.9 906,147 - AO353_04220 0.16 -2.3 906,147 - AO353_04220 0.16 +0.6 906,147 - AO353_04220 0.16 -2.1 906,211 + AO353_04220 0.22 -0.7 906,211 + AO353_04220 0.22 -0.4 906,211 + AO353_04220 0.22 -0.9 906,212 - AO353_04220 0.22 -0.5 906,212 - AO353_04220 0.22 +1.2 906,212 - AO353_04220 0.22 -0.1 906,212 - AO353_04220 0.22 +0.6 906,212 - AO353_04220 0.22 -1.4 906,254 - AO353_04220 0.26 -0.5 906,254 - AO353_04220 0.26 +0.2 906,254 - AO353_04220 0.26 -0.8 906,254 - AO353_04220 0.26 -1.1 906,254 - AO353_04220 0.26 +0.2 906,281 - AO353_04220 0.29 +0.9 906,290 + AO353_04220 0.30 -1.4 906,303 + AO353_04220 0.31 -1.9 907,013 + +0.4 907,014 - +0.9 907,014 - -1.3 907,014 - -0.3 907,014 - +1.8 907,014 - +0.2 907,067 + -0.1 907,068 - -0.2 907,068 - -0.7 907,068 - -1.9 907,068 - +1.6 907,071 + -0.8 907,071 + -0.0 907,071 + +0.4 907,071 + -0.2 907,071 + +0.6 907,071 + +0.1 907,071 + -0.0 907,072 - -0.6 907,072 - -0.5 907,072 - +0.1 907,072 - +0.1 907,072 - -0.4 907,072 - +0.9 907,072 - +0.3 907,072 - -1.6 907,072 - +0.3 907,074 + +0.6 907,074 + +0.6 907,074 + -0.0 907,075 - +0.6 907,075 - -0.2 907,075 - -0.7 907,075 - -0.4 907,125 + -0.4 907,125 + +0.1 907,125 + -0.4 907,125 + -0.6 907,126 - -0.5 907,126 - -0.9 907,126 - -0.7 907,210 + -0.2 907,211 - -1.7 907,363 + AO353_04225 0.16 -0.7 907,363 + AO353_04225 0.16 -0.5 907,363 + AO353_04225 0.16 -0.7 907,363 + AO353_04225 0.16 -0.4 907,363 + AO353_04225 0.16 +2.0 907,363 + AO353_04225 0.16 -0.3 907,364 - AO353_04225 0.16 -0.8 907,599 + AO353_04225 0.26 -0.9 907,599 + AO353_04225 0.26 +0.1 907,599 + AO353_04225 0.26 -0.2 907,599 + AO353_04225 0.26 +0.5 907,600 - AO353_04225 0.26 -1.7 907,600 - AO353_04225 0.26 +0.2 907,600 - AO353_04225 0.26 +0.2 907,634 - AO353_04225 0.28 -0.9 907,800 + AO353_04225 0.35 -0.6 907,800 + AO353_04225 0.35 -0.0 907,800 + AO353_04225 0.35 +0.1 907,800 + AO353_04225 0.35 -0.1 907,801 - AO353_04225 0.35 -0.4 907,801 - AO353_04225 0.35 -3.1 907,952 + AO353_04225 0.42 +1.2 907,952 + AO353_04225 0.42 -0.9 907,952 + AO353_04225 0.42 -0.5
Or see this region's nucleotide sequence