Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04020

Experiment: Polymyxin B sulfate 4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04015 and AO353_04020 overlap by 11 nucleotidesAO353_04020 and AO353_04025 are separated by 217 nucleotides AO353_04015: AO353_04015 - histidine kinase, at 863,772 to 865,052 _04015 AO353_04020: AO353_04020 - XRE family transcriptional regulator, at 865,042 to 865,725 _04020 AO353_04025: AO353_04025 - molecular chaperone GroEL, at 865,943 to 867,586 _04025 Position (kb) 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 864.048 kb on - strand, within AO353_04015at 864.090 kb on - strand, within AO353_04015at 864.091 kb on + strand, within AO353_04015at 864.092 kb on - strand, within AO353_04015at 864.121 kb on + strand, within AO353_04015at 864.121 kb on + strand, within AO353_04015at 864.121 kb on + strand, within AO353_04015at 864.121 kb on + strand, within AO353_04015at 864.121 kb on + strand, within AO353_04015at 864.122 kb on - strand, within AO353_04015at 864.122 kb on - strand, within AO353_04015at 864.122 kb on - strand, within AO353_04015at 864.366 kb on + strand, within AO353_04015at 864.497 kb on - strand, within AO353_04015at 864.497 kb on - strand, within AO353_04015at 864.497 kb on - strand, within AO353_04015at 864.627 kb on + strand, within AO353_04015at 864.627 kb on + strand, within AO353_04015at 864.627 kb on + strand, within AO353_04015at 864.627 kb on + strand, within AO353_04015at 864.628 kb on - strand, within AO353_04015at 864.628 kb on - strand, within AO353_04015at 864.628 kb on - strand, within AO353_04015at 864.628 kb on - strand, within AO353_04015at 864.630 kb on + strand, within AO353_04015at 864.630 kb on + strand, within AO353_04015at 864.630 kb on + strand, within AO353_04015at 864.630 kb on + strand, within AO353_04015at 864.706 kb on + strand, within AO353_04015at 864.707 kb on - strand, within AO353_04015at 864.707 kb on - strand, within AO353_04015at 864.707 kb on - strand, within AO353_04015at 864.742 kb on + strand, within AO353_04015at 864.742 kb on + strand, within AO353_04015at 864.742 kb on + strand, within AO353_04015at 864.742 kb on + strand, within AO353_04015at 864.742 kb on + strand, within AO353_04015at 864.743 kb on - strand, within AO353_04015at 864.743 kb on - strand, within AO353_04015at 864.762 kb on + strand, within AO353_04015at 864.762 kb on + strand, within AO353_04015at 864.763 kb on - strand, within AO353_04015at 864.763 kb on - strand, within AO353_04015at 864.835 kb on + strand, within AO353_04015at 864.835 kb on + strand, within AO353_04015at 864.836 kb on - strand, within AO353_04015at 864.836 kb on - strand, within AO353_04015at 864.836 kb on - strand, within AO353_04015at 864.878 kb on + strand, within AO353_04015at 864.969 kb on + strandat 865.016 kb on + strandat 865.043 kb on + strandat 865.043 kb on + strandat 865.044 kb on - strandat 865.044 kb on - strandat 865.044 kb on - strandat 865.204 kb on + strand, within AO353_04020at 865.205 kb on - strand, within AO353_04020at 865.322 kb on + strand, within AO353_04020at 865.322 kb on + strand, within AO353_04020at 865.322 kb on + strandat 865.323 kb on - strand, within AO353_04020at 865.323 kb on - strand, within AO353_04020at 865.323 kb on - strand, within AO353_04020at 865.323 kb on - strand, within AO353_04020at 865.323 kb on - strand, within AO353_04020at 865.430 kb on + strand, within AO353_04020at 865.430 kb on + strand, within AO353_04020at 865.431 kb on - strandat 865.431 kb on - strand, within AO353_04020at 865.547 kb on + strand, within AO353_04020at 865.547 kb on + strand, within AO353_04020at 865.547 kb on + strand, within AO353_04020at 865.547 kb on + strand, within AO353_04020at 865.548 kb on - strand, within AO353_04020at 865.592 kb on + strand, within AO353_04020at 865.592 kb on + strand, within AO353_04020at 865.592 kb on + strand, within AO353_04020at 865.592 kb on + strand, within AO353_04020at 865.592 kb on + strand, within AO353_04020at 865.593 kb on - strand, within AO353_04020at 865.593 kb on - strand, within AO353_04020at 865.593 kb on - strand, within AO353_04020at 865.650 kb on + strand, within AO353_04020at 865.652 kb on + strand, within AO353_04020at 865.652 kb on + strand, within AO353_04020at 865.653 kb on - strand, within AO353_04020at 865.653 kb on - strand, within AO353_04020at 865.659 kb on + strandat 865.659 kb on + strandat 865.660 kb on - strandat 865.671 kb on - strandat 865.714 kb on + strandat 865.714 kb on + strandat 865.714 kb on + strandat 865.714 kb on + strandat 865.715 kb on - strandat 865.715 kb on - strandat 865.715 kb on - strandat 865.741 kb on - strandat 865.749 kb on - strandat 865.773 kb on + strandat 865.774 kb on - strandat 865.796 kb on + strandat 865.796 kb on + strandat 865.797 kb on - strandat 865.797 kb on - strandat 865.797 kb on - strandat 865.888 kb on - strandat 865.906 kb on - strandat 865.945 kb on - strandat 865.945 kb on - strandat 865.945 kb on - strandat 865.945 kb on - strandat 865.945 kb on - strandat 865.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml
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864,048 - AO353_04015 0.22 -1.4
864,090 - AO353_04015 0.25 -0.8
864,091 + AO353_04015 0.25 -0.8
864,092 - AO353_04015 0.25 +1.0
864,121 + AO353_04015 0.27 -1.6
864,121 + AO353_04015 0.27 -2.2
864,121 + AO353_04015 0.27 -1.8
864,121 + AO353_04015 0.27 -0.5
864,121 + AO353_04015 0.27 -1.6
864,122 - AO353_04015 0.27 +0.4
864,122 - AO353_04015 0.27 -1.1
864,122 - AO353_04015 0.27 +0.9
864,366 + AO353_04015 0.46 -0.5
864,497 - AO353_04015 0.57 -1.8
864,497 - AO353_04015 0.57 +2.2
864,497 - AO353_04015 0.57 -2.5
864,627 + AO353_04015 0.67 -0.1
864,627 + AO353_04015 0.67 +0.0
864,627 + AO353_04015 0.67 -1.5
864,627 + AO353_04015 0.67 -1.0
864,628 - AO353_04015 0.67 -0.8
864,628 - AO353_04015 0.67 -1.2
864,628 - AO353_04015 0.67 -1.8
864,628 - AO353_04015 0.67 -0.2
864,630 + AO353_04015 0.67 +0.9
864,630 + AO353_04015 0.67 -0.2
864,630 + AO353_04015 0.67 -0.6
864,630 + AO353_04015 0.67 -0.8
864,706 + AO353_04015 0.73 +0.0
864,707 - AO353_04015 0.73 +0.6
864,707 - AO353_04015 0.73 +0.0
864,707 - AO353_04015 0.73 -0.2
864,742 + AO353_04015 0.76 -0.1
864,742 + AO353_04015 0.76 -1.2
864,742 + AO353_04015 0.76 +0.8
864,742 + AO353_04015 0.76 -1.3
864,742 + AO353_04015 0.76 +0.9
864,743 - AO353_04015 0.76 +0.6
864,743 - AO353_04015 0.76 +0.6
864,762 + AO353_04015 0.77 -1.3
864,762 + AO353_04015 0.77 +0.6
864,763 - AO353_04015 0.77 -2.0
864,763 - AO353_04015 0.77 -1.1
864,835 + AO353_04015 0.83 -2.8
864,835 + AO353_04015 0.83 +0.4
864,836 - AO353_04015 0.83 -2.3
864,836 - AO353_04015 0.83 -0.7
864,836 - AO353_04015 0.83 -0.5
864,878 + AO353_04015 0.86 -1.5
864,969 + -0.2
865,016 + -2.1
865,043 + -1.7
865,043 + -0.9
865,044 - -1.7
865,044 - -0.4
865,044 - -0.1
865,204 + AO353_04020 0.24 -3.5
865,205 - AO353_04020 0.24 -1.7
865,322 + AO353_04020 0.41 -1.7
865,322 + AO353_04020 0.41 -1.4
865,322 + +0.1
865,323 - AO353_04020 0.41 -2.2
865,323 - AO353_04020 0.41 -0.9
865,323 - AO353_04020 0.41 -2.1
865,323 - AO353_04020 0.41 -1.0
865,323 - AO353_04020 0.41 -2.4
865,430 + AO353_04020 0.57 -1.3
865,430 + AO353_04020 0.57 -3.0
865,431 - -0.4
865,431 - AO353_04020 0.57 -3.3
865,547 + AO353_04020 0.74 -1.0
865,547 + AO353_04020 0.74 -2.7
865,547 + AO353_04020 0.74 -0.6
865,547 + AO353_04020 0.74 -2.4
865,548 - AO353_04020 0.74 -2.2
865,592 + AO353_04020 0.80 -3.1
865,592 + AO353_04020 0.80 -3.0
865,592 + AO353_04020 0.80 -1.6
865,592 + AO353_04020 0.80 -0.9
865,592 + AO353_04020 0.80 -3.5
865,593 - AO353_04020 0.81 -0.8
865,593 - AO353_04020 0.81 -2.6
865,593 - AO353_04020 0.81 -0.2
865,650 + AO353_04020 0.89 -2.7
865,652 + AO353_04020 0.89 -2.8
865,652 + AO353_04020 0.89 -2.0
865,653 - AO353_04020 0.89 -1.4
865,653 - AO353_04020 0.89 -0.5
865,659 + -1.5
865,659 + -0.4
865,660 - +1.1
865,671 - -1.4
865,714 + -1.5
865,714 + -2.3
865,714 + -1.9
865,714 + -0.5
865,715 - -2.8
865,715 - -2.8
865,715 - -2.4
865,741 - +1.5
865,749 - -0.0
865,773 + -1.5
865,774 - -0.3
865,796 + -1.2
865,796 + -1.4
865,797 - -1.2
865,797 - -1.5
865,797 - -0.9
865,888 - +0.3
865,906 - -1.5
865,945 - -1.4
865,945 - +0.9
865,945 - +0.1
865,945 - +1.2
865,945 - -0.4
865,945 - -0.7

Or see this region's nucleotide sequence