Experiment: Polymyxin B sulfate 4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03295 and AO353_03300 are separated by 179 nucleotides AO353_03300 and AO353_03305 are separated by 197 nucleotides AO353_03305 and AO353_03310 are separated by 227 nucleotides
AO353_03295: AO353_03295 - ribonuclease BN, at 701,889 to 702,833
_03295
AO353_03300: AO353_03300 - hypothetical protein, at 703,013 to 703,204
_03300
AO353_03305: AO353_03305 - hypothetical protein, at 703,402 to 703,779
_03305
AO353_03310: AO353_03310 - long-chain fatty acid--CoA ligase, at 704,007 to 705,707
_03310
Position (kb) 703
704 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 702.415 kb on + strand, within AO353_03295 at 702.415 kb on + strand, within AO353_03295 at 702.415 kb on + strand, within AO353_03295 at 702.416 kb on - strand, within AO353_03295 at 702.469 kb on + strand, within AO353_03295 at 702.469 kb on + strand, within AO353_03295 at 702.469 kb on + strand, within AO353_03295 at 702.469 kb on + strand, within AO353_03295 at 702.470 kb on - strand, within AO353_03295 at 702.618 kb on + strand, within AO353_03295 at 702.727 kb on + strand, within AO353_03295 at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.745 kb on + strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.746 kb on - strand at 702.767 kb on + strand at 702.767 kb on + strand at 702.768 kb on - strand at 702.768 kb on - strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.833 kb on + strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.834 kb on - strand at 702.902 kb on + strand at 702.903 kb on - strand at 702.907 kb on + strand at 702.907 kb on + strand at 702.907 kb on + strand at 702.944 kb on + strand at 702.944 kb on + strand at 702.945 kb on - strand at 702.945 kb on - strand at 702.950 kb on + strand at 702.950 kb on + strand at 702.950 kb on + strand at 702.950 kb on + strand at 702.950 kb on + strand at 702.950 kb on + strand at 702.951 kb on - strand at 702.951 kb on - strand at 702.951 kb on - strand at 702.951 kb on - strand at 702.951 kb on - strand at 702.951 kb on - strand at 702.996 kb on + strand at 702.997 kb on - strand at 703.022 kb on - strand at 703.049 kb on - strand, within AO353_03300 at 703.133 kb on - strand, within AO353_03300 at 703.133 kb on - strand, within AO353_03300 at 703.180 kb on + strand, within AO353_03300 at 703.180 kb on + strand, within AO353_03300 at 703.181 kb on - strand, within AO353_03300 at 703.181 kb on - strand, within AO353_03300 at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.207 kb on + strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.208 kb on - strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.240 kb on + strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.241 kb on - strand at 703.244 kb on + strand at 703.244 kb on + strand at 703.244 kb on + strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.245 kb on - strand at 703.281 kb on + strand at 703.324 kb on + strand at 703.324 kb on + strand at 703.325 kb on - strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.359 kb on + strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.360 kb on - strand at 703.392 kb on + strand at 703.509 kb on + strand, within AO353_03305 at 703.509 kb on + strand, within AO353_03305 at 703.509 kb on + strand, within AO353_03305 at 703.555 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.579 kb on + strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.580 kb on - strand, within AO353_03305 at 703.720 kb on + strand, within AO353_03305 at 703.720 kb on + strand, within AO353_03305 at 703.721 kb on - strand, within AO353_03305 at 703.721 kb on - strand, within AO353_03305 at 703.778 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.836 kb on - strand at 703.969 kb on + strand at 703.969 kb on + strand at 703.970 kb on - strand at 703.970 kb on - strand at 704.009 kb on - strand at 704.131 kb on + strand at 704.286 kb on + strand, within AO353_03310 at 704.286 kb on + strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.287 kb on - strand, within AO353_03310 at 704.309 kb on - strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.365 kb on + strand, within AO353_03310 at 704.366 kb on - strand, within AO353_03310 at 704.366 kb on - strand, within AO353_03310 at 704.564 kb on + strand, within AO353_03310 at 704.577 kb on + strand, within AO353_03310 at 704.578 kb on - strand, within AO353_03310 at 704.578 kb on - strand at 704.578 kb on - strand, within AO353_03310 at 704.763 kb on - strand, within AO353_03310
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml remove 702,415 + AO353_03295 0.56 +2.0 702,415 + AO353_03295 0.56 +2.1 702,415 + AO353_03295 0.56 +0.3 702,416 - AO353_03295 0.56 +1.6 702,469 + AO353_03295 0.61 +3.0 702,469 + AO353_03295 0.61 +0.4 702,469 + AO353_03295 0.61 +0.6 702,469 + AO353_03295 0.61 -0.2 702,470 - AO353_03295 0.61 -0.2 702,618 + AO353_03295 0.77 -1.3 702,727 + AO353_03295 0.89 -0.7 702,745 + +0.4 702,745 + +2.1 702,745 + +0.4 702,745 + +1.6 702,745 + -1.2 702,745 + +0.0 702,745 + +1.1 702,745 + -1.9 702,745 + -2.8 702,745 + -1.0 702,745 + +0.6 702,746 - -0.5 702,746 - -0.2 702,746 - -0.0 702,746 - +0.5 702,746 - +0.3 702,746 - +1.0 702,746 - +1.3 702,746 - -0.7 702,767 + +0.6 702,767 + +1.3 702,768 - +1.1 702,768 - +0.2 702,833 + +0.2 702,833 + -0.5 702,833 + -1.2 702,833 + +0.0 702,833 + +0.0 702,833 + -1.2 702,833 + -1.0 702,833 + +1.0 702,833 + +2.6 702,833 + +0.6 702,833 + +0.0 702,833 + -0.4 702,834 - +0.7 702,834 - +1.6 702,834 - -1.2 702,834 - -0.2 702,834 - +0.2 702,834 - -0.3 702,834 - -0.1 702,902 + +1.1 702,903 - +0.6 702,907 + -0.2 702,907 + -0.6 702,907 + +0.0 702,944 + +0.2 702,944 + -1.2 702,945 - -1.4 702,945 - +0.5 702,950 + -0.2 702,950 + +1.2 702,950 + -0.8 702,950 + +0.8 702,950 + -0.2 702,950 + +1.0 702,951 - -1.0 702,951 - -0.3 702,951 - -0.6 702,951 - -0.4 702,951 - +0.3 702,951 - -1.4 702,996 + -0.3 702,997 - -1.0 703,022 - -0.2 703,049 - AO353_03300 0.19 -0.1 703,133 - AO353_03300 0.62 -1.2 703,133 - AO353_03300 0.62 -0.7 703,180 + AO353_03300 0.87 +1.4 703,180 + AO353_03300 0.87 +0.2 703,181 - AO353_03300 0.88 +0.4 703,181 - AO353_03300 0.88 +0.0 703,207 + -1.3 703,207 + -0.2 703,207 + -0.1 703,207 + +0.5 703,207 + +1.1 703,207 + +0.8 703,207 + -0.3 703,207 + +0.5 703,207 + -0.9 703,207 + -0.3 703,208 - +0.6 703,208 - +0.1 703,208 - -1.3 703,208 - +0.2 703,208 - -0.1 703,208 - +0.2 703,208 - -0.2 703,208 - +1.0 703,208 - -0.3 703,240 + +1.2 703,240 + +0.8 703,240 + +0.0 703,240 + -0.5 703,240 + -0.4 703,241 - -1.4 703,241 - -0.1 703,241 - +2.2 703,241 - -0.6 703,241 - +0.4 703,244 + -0.0 703,244 + +0.9 703,244 + -2.6 703,245 - -1.4 703,245 - -0.0 703,245 - +2.2 703,245 - -0.3 703,245 - +1.0 703,245 - +0.6 703,281 + -2.0 703,324 + +0.4 703,324 + -0.1 703,325 - -1.0 703,359 + -0.5 703,359 + -1.2 703,359 + -0.4 703,359 + -1.1 703,359 + -1.6 703,360 - +0.4 703,360 - +0.0 703,360 - -0.2 703,360 - -1.2 703,392 + -1.0 703,509 + AO353_03305 0.28 +0.4 703,509 + AO353_03305 0.28 -1.7 703,509 + AO353_03305 0.28 -0.5 703,555 + AO353_03305 0.40 -2.0 703,579 + AO353_03305 0.47 +1.0 703,579 + AO353_03305 0.47 +1.3 703,579 + AO353_03305 0.47 +0.3 703,579 + AO353_03305 0.47 +1.3 703,579 + AO353_03305 0.47 -0.2 703,579 + AO353_03305 0.47 +0.2 703,579 + AO353_03305 0.47 -0.4 703,580 - AO353_03305 0.47 +1.0 703,580 - AO353_03305 0.47 +1.3 703,580 - AO353_03305 0.47 -1.0 703,580 - AO353_03305 0.47 +0.6 703,580 - AO353_03305 0.47 +0.9 703,580 - AO353_03305 0.47 +0.6 703,580 - AO353_03305 0.47 -0.6 703,580 - AO353_03305 0.47 -0.6 703,580 - AO353_03305 0.47 -1.2 703,580 - AO353_03305 0.47 -0.2 703,580 - AO353_03305 0.47 -0.0 703,720 + AO353_03305 0.84 +2.1 703,720 + AO353_03305 0.84 -2.0 703,721 - AO353_03305 0.84 -0.7 703,721 - AO353_03305 0.84 +0.1 703,778 - +1.6 703,836 - +0.8 703,836 - -1.8 703,836 - +0.7 703,836 - -1.3 703,836 - +0.4 703,836 - -0.0 703,836 - -0.1 703,836 - -0.6 703,836 - -0.6 703,836 - +0.4 703,969 + -0.9 703,969 + -0.6 703,970 - -0.2 703,970 - -1.0 704,009 - +0.5 704,131 + +0.8 704,286 + AO353_03310 0.16 +0.3 704,286 + AO353_03310 0.16 +1.2 704,287 - AO353_03310 0.16 +0.4 704,287 - AO353_03310 0.16 +0.4 704,287 - AO353_03310 0.16 -0.6 704,309 - AO353_03310 0.18 +1.0 704,365 + AO353_03310 0.21 +0.5 704,365 + AO353_03310 0.21 +0.3 704,365 + AO353_03310 0.21 +0.5 704,366 - AO353_03310 0.21 -1.6 704,366 - AO353_03310 0.21 -1.0 704,564 + AO353_03310 0.33 -1.1 704,577 + AO353_03310 0.34 +0.4 704,578 - AO353_03310 0.34 +0.8 704,578 - +1.6 704,578 - AO353_03310 0.34 +1.4 704,763 - AO353_03310 0.44 +0.7
Or see this region's nucleotide sequence