Experiment: Polymyxin B sulfate 4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02135 and AO353_02140 are separated by 270 nucleotides AO353_02140 and AO353_02145 are separated by 13 nucleotides AO353_02145 and AO353_02150 are separated by 192 nucleotides
AO353_02135: AO353_02135 - hypothetical protein, at 458,668 to 459,609
_02135
AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179
_02140
AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717
_02145
AO353_02150: AO353_02150 - fumarate hydratase, at 460,910 to 462,304
_02150
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.201 kb on - strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.272 kb on + strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.273 kb on - strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.374 kb on + strand, within AO353_02135 at 459.554 kb on + strand at 459.554 kb on + strand at 459.554 kb on + strand at 459.555 kb on - strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.576 kb on + strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.577 kb on - strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.578 kb on + strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.579 kb on - strand at 459.715 kb on + strand at 459.778 kb on - strand at 459.821 kb on - strand at 459.824 kb on - strand at 459.824 kb on - strand at 459.824 kb on - strand at 459.951 kb on + strand, within AO353_02140 at 459.951 kb on + strand, within AO353_02140 at 459.951 kb on + strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.952 kb on - strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.953 kb on + strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.954 kb on - strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.957 kb on + strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 459.958 kb on - strand, within AO353_02140 at 460.008 kb on - strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.101 kb on + strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.102 kb on - strand, within AO353_02140 at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.371 kb on + strand, within AO353_02145 at 460.372 kb on - strand, within AO353_02145 at 460.372 kb on - strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.419 kb on + strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.420 kb on - strand, within AO353_02145 at 460.494 kb on + strand, within AO353_02145 at 460.494 kb on + strand, within AO353_02145 at 460.495 kb on - strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.575 kb on + strand, within AO353_02145 at 460.576 kb on - strand, within AO353_02145 at 460.576 kb on - strand, within AO353_02145 at 460.693 kb on + strand at 460.694 kb on - strand at 460.732 kb on + strand at 460.732 kb on + strand at 460.732 kb on + strand at 460.732 kb on + strand at 460.733 kb on - strand at 460.744 kb on + strand at 460.745 kb on - strand at 460.745 kb on - strand at 460.857 kb on + strand at 460.858 kb on - strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.875 kb on + strand at 460.876 kb on - strand at 460.894 kb on + strand at 460.894 kb on + strand at 460.895 kb on - strand at 460.905 kb on - strand at 460.964 kb on + strand at 460.964 kb on + strand at 460.964 kb on + strand at 460.964 kb on + strand at 460.964 kb on + strand at 460.965 kb on - strand at 460.965 kb on - strand at 460.996 kb on + strand at 460.997 kb on - strand at 461.034 kb on + strand at 461.080 kb on + strand, within AO353_02150 at 461.080 kb on + strand, within AO353_02150 at 461.351 kb on - strand, within AO353_02150 at 461.371 kb on - strand, within AO353_02150 at 461.371 kb on - strand, within AO353_02150
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 4 mg/ml remove 459,201 - AO353_02135 0.57 +0.2 459,201 - AO353_02135 0.57 +0.1 459,201 - AO353_02135 0.57 -1.0 459,272 + AO353_02135 0.64 -0.2 459,272 + AO353_02135 0.64 -1.3 459,272 + AO353_02135 0.64 +1.2 459,272 + AO353_02135 0.64 -0.5 459,272 + AO353_02135 0.64 -0.3 459,272 + AO353_02135 0.64 -1.4 459,272 + AO353_02135 0.64 -0.0 459,272 + AO353_02135 0.64 -0.8 459,273 - AO353_02135 0.64 -1.4 459,273 - AO353_02135 0.64 +0.3 459,273 - AO353_02135 0.64 -0.0 459,273 - AO353_02135 0.64 -0.0 459,273 - AO353_02135 0.64 -0.4 459,273 - AO353_02135 0.64 -1.3 459,273 - AO353_02135 0.64 +0.4 459,273 - AO353_02135 0.64 +1.2 459,273 - AO353_02135 0.64 +1.6 459,273 - AO353_02135 0.64 +0.9 459,273 - AO353_02135 0.64 -0.8 459,273 - AO353_02135 0.64 +1.3 459,374 + AO353_02135 0.75 +0.2 459,374 + AO353_02135 0.75 +0.4 459,374 + AO353_02135 0.75 -0.9 459,554 + -0.6 459,554 + -0.6 459,554 + +1.9 459,555 - -0.4 459,576 + -0.4 459,576 + +0.2 459,576 + +0.8 459,576 + +0.7 459,576 + +0.9 459,576 + -0.4 459,576 + -1.9 459,577 - +1.6 459,577 - +0.3 459,577 - -1.8 459,577 - -1.1 459,577 - +1.0 459,577 - +1.4 459,577 - +0.4 459,577 - +0.1 459,577 - -0.5 459,577 - +1.0 459,577 - -0.8 459,577 - +0.4 459,577 - +0.1 459,578 + -0.1 459,578 + -0.6 459,578 + -1.6 459,578 + +0.0 459,578 + -0.4 459,578 + +0.6 459,578 + +0.4 459,578 + -0.4 459,578 + -0.1 459,578 + +0.0 459,578 + -1.3 459,578 + -0.7 459,578 + -1.4 459,578 + -0.3 459,579 - +0.2 459,579 - -0.1 459,579 - -0.3 459,579 - -0.8 459,715 + +0.7 459,778 - +1.3 459,821 - -0.7 459,824 - -0.2 459,824 - +1.1 459,824 - -0.7 459,951 + AO353_02140 0.24 -0.5 459,951 + AO353_02140 0.24 -0.5 459,951 + AO353_02140 0.24 -1.0 459,952 - AO353_02140 0.24 +0.7 459,952 - AO353_02140 0.24 -0.5 459,952 - AO353_02140 0.24 -2.0 459,953 + AO353_02140 0.24 -1.5 459,953 + AO353_02140 0.24 -0.1 459,953 + AO353_02140 0.24 -1.6 459,953 + AO353_02140 0.24 -0.9 459,953 + AO353_02140 0.24 -0.3 459,953 + AO353_02140 0.24 +0.8 459,953 + AO353_02140 0.24 -0.5 459,953 + AO353_02140 0.24 +1.7 459,953 + AO353_02140 0.24 -1.2 459,953 + AO353_02140 0.24 -0.5 459,953 + AO353_02140 0.24 -1.2 459,953 + AO353_02140 0.24 -0.3 459,954 - AO353_02140 0.25 -0.3 459,954 - AO353_02140 0.25 -1.8 459,954 - AO353_02140 0.25 -1.0 459,954 - AO353_02140 0.25 -1.3 459,954 - AO353_02140 0.25 +0.2 459,954 - AO353_02140 0.25 -0.5 459,954 - AO353_02140 0.25 -0.5 459,954 - AO353_02140 0.25 -0.0 459,954 - AO353_02140 0.25 -0.7 459,954 - AO353_02140 0.25 -0.0 459,954 - AO353_02140 0.25 -0.2 459,954 - AO353_02140 0.25 -0.1 459,954 - AO353_02140 0.25 +0.9 459,954 - AO353_02140 0.25 -0.0 459,957 + AO353_02140 0.26 +0.1 459,957 + AO353_02140 0.26 -1.0 459,957 + AO353_02140 0.26 +0.2 459,957 + AO353_02140 0.26 +0.3 459,957 + AO353_02140 0.26 -0.6 459,957 + AO353_02140 0.26 -1.0 459,957 + AO353_02140 0.26 -1.2 459,958 - AO353_02140 0.26 -0.8 459,958 - AO353_02140 0.26 +1.1 459,958 - AO353_02140 0.26 -0.2 459,958 - AO353_02140 0.26 +0.5 459,958 - AO353_02140 0.26 -1.4 459,958 - AO353_02140 0.26 +0.7 459,958 - AO353_02140 0.26 -1.0 460,008 - AO353_02140 0.43 +0.2 460,101 + AO353_02140 0.74 -2.5 460,101 + AO353_02140 0.74 +0.4 460,101 + AO353_02140 0.74 -0.4 460,101 + AO353_02140 0.74 -0.5 460,101 + AO353_02140 0.74 +0.3 460,102 - AO353_02140 0.74 -1.0 460,102 - AO353_02140 0.74 -0.5 460,102 - AO353_02140 0.74 +1.3 460,102 - AO353_02140 0.74 -0.0 460,102 - AO353_02140 0.74 +0.4 460,102 - AO353_02140 0.74 -1.3 460,102 - AO353_02140 0.74 -1.5 460,102 - AO353_02140 0.74 -0.5 460,161 + -0.6 460,161 + +0.1 460,161 + -0.3 460,371 + AO353_02145 0.34 -1.6 460,372 - AO353_02145 0.34 -0.8 460,372 - AO353_02145 0.34 -0.9 460,419 + AO353_02145 0.43 -1.8 460,419 + AO353_02145 0.43 -1.4 460,419 + AO353_02145 0.43 +0.7 460,420 - AO353_02145 0.43 -1.4 460,420 - AO353_02145 0.43 -0.8 460,420 - AO353_02145 0.43 +1.2 460,420 - AO353_02145 0.43 -1.3 460,494 + AO353_02145 0.57 -1.2 460,494 + AO353_02145 0.57 -0.8 460,495 - AO353_02145 0.58 -1.2 460,575 + AO353_02145 0.73 +0.1 460,575 + AO353_02145 0.73 -1.6 460,575 + AO353_02145 0.73 -2.0 460,575 + AO353_02145 0.73 -0.6 460,575 + AO353_02145 0.73 -0.6 460,575 + AO353_02145 0.73 +0.8 460,575 + AO353_02145 0.73 -1.8 460,575 + AO353_02145 0.73 -0.8 460,576 - AO353_02145 0.73 +0.1 460,576 - AO353_02145 0.73 -0.3 460,693 + +0.2 460,694 - -2.5 460,732 + -1.4 460,732 + -1.8 460,732 + +0.4 460,732 + -0.0 460,733 - -1.4 460,744 + +1.0 460,745 - -2.1 460,745 - +0.7 460,857 + -1.3 460,858 - +0.1 460,875 + +0.2 460,875 + -0.2 460,875 + +0.6 460,875 + +0.8 460,875 + +1.2 460,876 - +0.9 460,894 + -0.0 460,894 + +1.2 460,895 - -0.3 460,905 - +0.7 460,964 + +0.1 460,964 + +1.1 460,964 + -0.4 460,964 + -0.3 460,964 + +0.1 460,965 - -1.4 460,965 - -0.4 460,996 + +0.5 460,997 - -2.1 461,034 + -1.0 461,080 + AO353_02150 0.12 +1.2 461,080 + AO353_02150 0.12 +1.8 461,351 - AO353_02150 0.32 +0.6 461,371 - AO353_02150 0.33 -1.3 461,371 - AO353_02150 0.33 +0.3
Or see this region's nucleotide sequence