Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3139

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3137 and DvMF_3138 overlap by 4 nucleotidesDvMF_3138 and DvMF_3139 are separated by 6 nucleotidesDvMF_3139 and DvMF_3140 are separated by 335 nucleotides DvMF_3137: DvMF_3137 - ABC transporter related (RefSeq), at 3,957,156 to 3,957,989 _3137 DvMF_3138: DvMF_3138 - cobalt ABC transporter, inner membrane subunit CbiQ (RefSeq), at 3,957,986 to 3,958,783 _3138 DvMF_3139: DvMF_3139 - cobalt transport protein CbiM (RefSeq), at 3,958,790 to 3,959,404 _3139 DvMF_3140: DvMF_3140 - Citrate transporter (RefSeq), at 3,959,740 to 3,961,173 _3140 Position (kb) 3958 3959 3960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3957.837 kb on + strand, within DvMF_3137at 3958.045 kb on + strandat 3958.045 kb on + strandat 3958.053 kb on - strandat 3958.139 kb on - strand, within DvMF_3138at 3958.363 kb on - strand, within DvMF_3138at 3958.832 kb on + strandat 3959.000 kb on + strand, within DvMF_3139at 3959.083 kb on - strand, within DvMF_3139at 3959.124 kb on + strand, within DvMF_3139at 3959.399 kb on + strandat 3959.474 kb on + strandat 3959.629 kb on + strandat 3959.652 kb on + strandat 3959.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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3,957,837 + DvMF_3137 0.82 -0.2
3,958,045 + -0.2
3,958,045 + +2.2
3,958,053 - -0.5
3,958,139 - DvMF_3138 0.19 -2.9
3,958,363 - DvMF_3138 0.47 -1.3
3,958,832 + -0.0
3,959,000 + DvMF_3139 0.34 +2.5
3,959,083 - DvMF_3139 0.48 -1.2
3,959,124 + DvMF_3139 0.54 +0.2
3,959,399 + -1.7
3,959,474 + -0.2
3,959,629 + -0.6
3,959,652 + -0.7
3,959,750 - -0.6

Or see this region's nucleotide sequence