Experiment: MoYLS4 with Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2795 and DvMF_2796 are separated by 528 nucleotides DvMF_2796 and DvMF_2797 are separated by 0 nucleotides DvMF_2797 and DvMF_2798 are separated by 64 nucleotides
DvMF_2795: DvMF_2795 - peptidase M29 aminopeptidase II (RefSeq), at 3,537,983 to 3,539,182
_2795
DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453
_2796
DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044
_2797
DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579
_2798
Position (kb)
3539
3540
3541
3542 Strain fitness (log2 ratio)
-1
0
1 at 3538.783 kb on + strand, within DvMF_2795 at 3538.794 kb on - strand, within DvMF_2795 at 3538.828 kb on - strand, within DvMF_2795 at 3538.978 kb on - strand, within DvMF_2795 at 3539.490 kb on - strand at 3539.709 kb on + strand at 3539.717 kb on - strand at 3539.717 kb on - strand at 3539.717 kb on - strand at 3539.758 kb on - strand at 3539.931 kb on - strand, within DvMF_2796 at 3540.134 kb on + strand, within DvMF_2796 at 3540.134 kb on + strand, within DvMF_2796 at 3540.312 kb on + strand, within DvMF_2796 at 3540.343 kb on + strand, within DvMF_2796 at 3540.369 kb on - strand, within DvMF_2796 at 3540.450 kb on - strand, within DvMF_2796 at 3540.693 kb on + strand, within DvMF_2796 at 3540.923 kb on - strand, within DvMF_2796 at 3541.159 kb on - strand, within DvMF_2796 at 3541.364 kb on - strand at 3541.670 kb on - strand, within DvMF_2797 at 3541.726 kb on + strand, within DvMF_2797 at 3541.946 kb on - strand, within DvMF_2797 at 3542.006 kb on - strand at 3542.041 kb on + strand at 3542.122 kb on - strand at 3542.137 kb on - strand at 3542.244 kb on - strand, within DvMF_2798
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml remove 3,538,783 + DvMF_2795 0.67 -0.3 3,538,794 - DvMF_2795 0.68 -0.3 3,538,828 - DvMF_2795 0.70 -0.9 3,538,978 - DvMF_2795 0.83 -0.8 3,539,490 - +0.0 3,539,709 + +0.1 3,539,717 - -0.9 3,539,717 - -0.4 3,539,717 - -0.9 3,539,758 - -1.2 3,539,931 - DvMF_2796 0.13 +0.7 3,540,134 + DvMF_2796 0.24 -0.1 3,540,134 + DvMF_2796 0.24 -0.4 3,540,312 + DvMF_2796 0.34 +0.2 3,540,343 + DvMF_2796 0.36 -0.2 3,540,369 - DvMF_2796 0.38 -0.7 3,540,450 - DvMF_2796 0.42 -0.5 3,540,693 + DvMF_2796 0.56 -0.8 3,540,923 - DvMF_2796 0.70 -0.6 3,541,159 - DvMF_2796 0.83 +0.0 3,541,364 - -0.8 3,541,670 - DvMF_2797 0.37 -0.5 3,541,726 + DvMF_2797 0.46 -0.5 3,541,946 - DvMF_2797 0.83 -0.9 3,542,006 - -1.1 3,542,041 + -0.5 3,542,122 - -0.3 3,542,137 - -1.2 3,542,244 - DvMF_2798 0.29 -0.4
Or see this region's nucleotide sequence