Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2796

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2795 and DvMF_2796 are separated by 528 nucleotidesDvMF_2796 and DvMF_2797 are separated by 0 nucleotidesDvMF_2797 and DvMF_2798 are separated by 64 nucleotides DvMF_2795: DvMF_2795 - peptidase M29 aminopeptidase II (RefSeq), at 3,537,983 to 3,539,182 _2795 DvMF_2796: DvMF_2796 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 3,539,711 to 3,541,453 _2796 DvMF_2797: DvMF_2797 - hypothetical protein (RefSeq), at 3,541,454 to 3,542,044 _2797 DvMF_2798: DvMF_2798 - transcription activator effector binding (RefSeq), at 3,542,109 to 3,542,579 _2798 Position (kb) 3539 3540 3541 3542Strain fitness (log2 ratio) -1 0 1at 3538.783 kb on + strand, within DvMF_2795at 3538.794 kb on - strand, within DvMF_2795at 3538.828 kb on - strand, within DvMF_2795at 3538.978 kb on - strand, within DvMF_2795at 3539.490 kb on - strandat 3539.709 kb on + strandat 3539.717 kb on - strandat 3539.717 kb on - strandat 3539.717 kb on - strandat 3539.758 kb on - strandat 3539.931 kb on - strand, within DvMF_2796at 3540.134 kb on + strand, within DvMF_2796at 3540.134 kb on + strand, within DvMF_2796at 3540.312 kb on + strand, within DvMF_2796at 3540.343 kb on + strand, within DvMF_2796at 3540.369 kb on - strand, within DvMF_2796at 3540.450 kb on - strand, within DvMF_2796at 3540.693 kb on + strand, within DvMF_2796at 3540.923 kb on - strand, within DvMF_2796at 3541.159 kb on - strand, within DvMF_2796at 3541.364 kb on - strandat 3541.670 kb on - strand, within DvMF_2797at 3541.726 kb on + strand, within DvMF_2797at 3541.946 kb on - strand, within DvMF_2797at 3542.006 kb on - strandat 3542.041 kb on + strandat 3542.122 kb on - strandat 3542.137 kb on - strandat 3542.244 kb on - strand, within DvMF_2798

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
remove
3,538,783 + DvMF_2795 0.67 -0.3
3,538,794 - DvMF_2795 0.68 -0.3
3,538,828 - DvMF_2795 0.70 -0.9
3,538,978 - DvMF_2795 0.83 -0.8
3,539,490 - +0.0
3,539,709 + +0.1
3,539,717 - -0.9
3,539,717 - -0.4
3,539,717 - -0.9
3,539,758 - -1.2
3,539,931 - DvMF_2796 0.13 +0.7
3,540,134 + DvMF_2796 0.24 -0.1
3,540,134 + DvMF_2796 0.24 -0.4
3,540,312 + DvMF_2796 0.34 +0.2
3,540,343 + DvMF_2796 0.36 -0.2
3,540,369 - DvMF_2796 0.38 -0.7
3,540,450 - DvMF_2796 0.42 -0.5
3,540,693 + DvMF_2796 0.56 -0.8
3,540,923 - DvMF_2796 0.70 -0.6
3,541,159 - DvMF_2796 0.83 +0.0
3,541,364 - -0.8
3,541,670 - DvMF_2797 0.37 -0.5
3,541,726 + DvMF_2797 0.46 -0.5
3,541,946 - DvMF_2797 0.83 -0.9
3,542,006 - -1.1
3,542,041 + -0.5
3,542,122 - -0.3
3,542,137 - -1.2
3,542,244 - DvMF_2798 0.29 -0.4

Or see this region's nucleotide sequence