Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2629

Experiment: MoYLS4 with Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2628 and DvMF_2629 are separated by 237 nucleotidesDvMF_2629 and DvMF_2630 are separated by 196 nucleotides DvMF_2628: DvMF_2628 - hypothetical protein (RefSeq), at 3,319,089 to 3,320,864 _2628 DvMF_2629: DvMF_2629 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,321,102 to 3,321,518 _2629 DvMF_2630: DvMF_2630 - penicillin-binding protein, 1A family (RefSeq), at 3,321,715 to 3,324,138 _2630 Position (kb) 3321 3322Strain fitness (log2 ratio) -1 0 1at 3320.285 kb on - strand, within DvMF_2628at 3320.412 kb on - strand, within DvMF_2628at 3320.644 kb on + strand, within DvMF_2628at 3320.729 kb on - strandat 3320.884 kb on + strandat 3321.008 kb on - strandat 3321.008 kb on - strandat 3321.018 kb on - strandat 3321.101 kb on - strandat 3321.147 kb on + strand, within DvMF_2629at 3321.192 kb on - strand, within DvMF_2629at 3321.256 kb on - strand, within DvMF_2629at 3321.300 kb on + strand, within DvMF_2629at 3321.343 kb on - strand, within DvMF_2629at 3321.402 kb on + strand, within DvMF_2629at 3321.548 kb on + strandat 3321.713 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml
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3,320,285 - DvMF_2628 0.67 -0.8
3,320,412 - DvMF_2628 0.74 -0.8
3,320,644 + DvMF_2628 0.88 -1.1
3,320,729 - -0.9
3,320,884 + -1.0
3,321,008 - -0.6
3,321,008 - -1.3
3,321,018 - -0.4
3,321,101 - +0.2
3,321,147 + DvMF_2629 0.11 -1.4
3,321,192 - DvMF_2629 0.22 -1.5
3,321,256 - DvMF_2629 0.37 -0.4
3,321,300 + DvMF_2629 0.47 -0.2
3,321,343 - DvMF_2629 0.58 -0.0
3,321,402 + DvMF_2629 0.72 -0.7
3,321,548 + -0.7
3,321,713 + -1.6

Or see this region's nucleotide sequence