Experiment: MoYLS4 with Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2435 and DvMF_2436 are separated by 3 nucleotides DvMF_2436 and DvMF_2437 are separated by 11 nucleotides DvMF_2437 and DvMF_2438 overlap by 8 nucleotides
DvMF_2435: DvMF_2435 - type III secretion system ATPase (RefSeq), at 3,070,214 to 3,071,530
_2435
DvMF_2436: DvMF_2436 - type III secretion YscO fmaily protein (RefSeq), at 3,071,534 to 3,072,037
_2436
DvMF_2437: DvMF_2437 - type III secretion system needle length determinant (RefSeq), at 3,072,049 to 3,072,813
_2437
DvMF_2438: DvMF_2438 - type III secretion system apparatus protein YscQ/HrcQ (RefSeq), at 3,072,806 to 3,074,035
_2438
Position (kb)
3071
3072
3073 Strain fitness (log2 ratio)
-2
-1
0
1 at 3070.617 kb on - strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.650 kb on + strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.658 kb on - strand, within DvMF_2435 at 3070.742 kb on + strand, within DvMF_2435 at 3070.950 kb on + strand, within DvMF_2435 at 3071.345 kb on + strand, within DvMF_2435 at 3071.454 kb on - strand at 3071.512 kb on + strand at 3071.634 kb on + strand, within DvMF_2436 at 3071.674 kb on - strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.761 kb on + strand, within DvMF_2436 at 3071.769 kb on - strand, within DvMF_2436 at 3071.835 kb on + strand, within DvMF_2436 at 3071.902 kb on + strand, within DvMF_2436 at 3071.986 kb on + strand, within DvMF_2436 at 3071.994 kb on - strand at 3071.994 kb on - strand at 3072.167 kb on + strand, within DvMF_2437 at 3072.292 kb on - strand, within DvMF_2437 at 3072.470 kb on + strand, within DvMF_2437 at 3072.600 kb on + strand, within DvMF_2437 at 3072.725 kb on - strand, within DvMF_2437 at 3072.807 kb on - strand at 3072.850 kb on - strand at 3072.914 kb on - strand at 3072.916 kb on + strand at 3072.930 kb on + strand, within DvMF_2438 at 3072.938 kb on - strand, within DvMF_2438
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Fusidic 0.03125 mg/ml remove 3,070,617 - DvMF_2435 0.31 -0.2 3,070,650 + DvMF_2435 0.33 +0.2 3,070,650 + DvMF_2435 0.33 -1.0 3,070,658 - DvMF_2435 0.34 -0.4 3,070,658 - DvMF_2435 0.34 -0.4 3,070,742 + DvMF_2435 0.40 -0.4 3,070,950 + DvMF_2435 0.56 -0.2 3,071,345 + DvMF_2435 0.86 -1.0 3,071,454 - +0.1 3,071,512 + -1.0 3,071,634 + DvMF_2436 0.20 -0.5 3,071,674 - DvMF_2436 0.28 -0.3 3,071,761 + DvMF_2436 0.45 -0.4 3,071,761 + DvMF_2436 0.45 -0.5 3,071,769 - DvMF_2436 0.47 -1.0 3,071,835 + DvMF_2436 0.60 -1.5 3,071,902 + DvMF_2436 0.73 -0.8 3,071,986 + DvMF_2436 0.90 -1.3 3,071,994 - +0.5 3,071,994 - -0.2 3,072,167 + DvMF_2437 0.15 -2.0 3,072,292 - DvMF_2437 0.32 -0.9 3,072,470 + DvMF_2437 0.55 -0.6 3,072,600 + DvMF_2437 0.72 +0.5 3,072,725 - DvMF_2437 0.88 +0.1 3,072,807 - -0.5 3,072,850 - -0.7 3,072,914 - -0.3 3,072,916 + -0.5 3,072,930 + DvMF_2438 0.10 +0.3 3,072,938 - DvMF_2438 0.11 -1.9
Or see this region's nucleotide sequence